Oh, yeeeeeeeeees. This is very tasty. Hum hum... lots of ways to play this. An obvious would be loss of the power bank that Amity is thank ls to how it is a haunting hot spot. He leave it, he leaves his power supply. Suddenly being Phantom is like being asemetic and in a constant flair up. He has ro hid that now. He has to protect Phantom.
But that has easy ways to be fixed and I do love a chronic condition (for fictional characters, far less fond of it for myself).
Bad!Fentons trying to save their son. Trying to cut away the diseased parts. Trying to cut away Phantom. And they do. Now Danny is running from his parents with the Crack core that was his his his--that is Phantom.
I think they would both be mesed up in that case though as they try to heal. But how can they? Danny is too human now to fix the hole inside him. Phantom is too human to heal like a ghost. He's still prone to being solid there real...but maybe... there's something under this city they came to. There's something under Gotham. Something that glows like hope and death all at once.
And then of course it could just be the ghost side that was ruined. Beaten and torn apart and angry claws ripped in and pulled--Pariah, the Observents, Clockwork. Phantom saying no to Clockwork and it's not... that's not... not the childnor baby or old man or mentor--was he ever a mentor or just using him like--
Phantom escapes, stumbles through a door and out a linen closet and down some stairs. He's in shreds. Parts ripped away. Gone. Choking on his own soul he turns back into Danny, because at least flesh and blood can be fixed.
It's a little more shocking for the Wayne's to find a bleeding child at the base of the foyer stairs. No alarms broken, but there is a child there and bleeding. They start considering dimension travel at the top of the 'how' list. Followed shortly by time travel.wrote