(Q92749888)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

title

Integrating Hi-C links with assembly graphs for chromosome-scale assembly (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Arang Rhie

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Brian P Walenz

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Mihai Pop

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Adam Phillippy

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Sergey Koren

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

4

Anthony Schmitt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

5

Siddarth Selvaraj

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

publication date

21 August 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

1 May 2020

language of work or name

English

0 references

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

page(s)

e1007273

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons CC0 License

1 May 2020

copyright license

start time

21 August 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Assembly of long, error-prone reads using repeat graphs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Nanopore sequencing and assembly of a human genome with ultra-long reads.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

ARCS: scaffolding genome drafts with linked reads.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Scaffolding of long read assemblies using long range contact information

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Direct determination of diploid genome sequences

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Phased diploid genome assembly with single-molecule real-time sequencing.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Assembly and diploid architecture of an individual human genome via single-molecule technologies

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

The Genome 10K Project: A Way Forward

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

High-quality genome (re)assembly using chromosomal contact data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

High-throughput genome scaffolding from in vivo DNA interaction frequency

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Organization of the mitotic chromosome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Sequence assembly demystified

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Topological domains in mammalian genomes identified by analysis of chromatin interactions

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Feature-by-Feature – Evaluating De Novo Sequence Assembly

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

GAGE: A critical evaluation of genome assemblies and assembly algorithms

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Assembly algorithms for next-generation sequencing data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Parametric complexity of sequence assembly: theory and applications to next generation sequencing

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Fast and accurate short read alignment with Burrows-Wheeler transform

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Real-time DNA sequencing from single polymerase molecules

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

The fragment assembly string graph

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Versatile and open software for comparing large genomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

An Eulerian path approach to DNA fragment assembly

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

A new strategy for genome sequencing

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6719893

10.1371/JOURNAL.PCBI.1007273

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/GhuryeRWSSPPK19

1 May 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31433799%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

31433799

1 reference