(Q38670060)

5 September 2017

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models (English)

1 reference

5 September 2017

Vassily Hatzimanikatis

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Meric Ataman

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

Daniel F Hernandez Gardiol

5 June 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Georgios Fengos

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Daniel F Hernandez Gardiol

2

1 reference

5 September 2017

Georgios Fengos

3

1 reference

5 September 2017

20 July 2017

1 reference

PLOS Computational Biology

5 September 2017

language of work or name

English

0 references

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

e1005444

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 June 2020

copyright license

start time

20 July 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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6 September 2017

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6 September 2017

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6 September 2017

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Constraining the Flux Space Using Thermodynamics and Integration of Metabolomics Data

6 September 2017

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A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data

6 September 2017

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The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum

6 September 2017

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From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks

6 September 2017

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6 September 2017

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6 September 2017

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Dispensability of Escherichia coli ’s latent pathways

6 September 2017

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6 September 2017

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6 September 2017

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Integration of metabolic databases for the reconstruction of genome-scale metabolic networks

6 September 2017

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Network thermodynamics in the post-genomic era.

6 September 2017

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Connecting extracellular metabolomic measurements to intracellular flux states in yeast

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

6 September 2017

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6 September 2017

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The activity reaction core and plasticity of metabolic networks

6 September 2017

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Analysis of optimality in natural and perturbed metabolic networks

6 September 2017

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Dynamic flux balance analysis of diauxic growth in Escherichia coli

6 September 2017

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6 September 2017

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The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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14 September 2017

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Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates.

14 September 2017

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Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

14 September 2017

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lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites

14 September 2017

1 reference

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Large‐scale 13 C‐flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

25 September 2017

1 reference

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Thermodynamics-based metabolic flux analysis

23 June 2018

1 reference

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Genome-scale thermodynamic analysis of Escherichia coli metabolism

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Systems properties of the Haemophilus influenzae Rd metabolic genotype

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Estimation of standard Gibbs energy changes of biotransformations

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Dynamic metabolic models in context: biomass backtracking

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Molecular thermodynamics of metabolism: quantum thermochemical calculations for key metabolites

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Production of biofuels and biochemicals: in need of an ORACLE.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Dynamic modeling of Escherichia coli metabolic and regulatory systems for amino-acid production.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Computing the shortest elementary flux modes in genome-scale metabolic networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Equations and calculations for fermentations of butyric acid bacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Extreme pathways and Kirchhoff's second law.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519011

Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1005444

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1005444

Reducing Recon 2 for steady-state flux analysis of HEK cell culture

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1005444

Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28727725

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1005444

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/AtamanGFH17

5 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28727725%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

28727725

1 reference