mri-data

Code for analyzing medical images saved as .dicom files

input ct data use U-net method systh mri

Basic reconstruction scripts for data uploaded to mridata.org

"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interfaces and neuro-feedback applications.

Flexible bidsificator for multimodal datasets

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Code to run and analyze fMRI study of somatosensory detection task

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Normative modelling code to go along with Bethlehem et al. 2018

Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.

Docker container for FiberNavigator for Brainlife.io

MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.