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The Wayback Machine - https://web.archive.org/web/20220523103952/https://github.com/topics/fasta
Here are
308 public repositories
matching this topic...
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Versatile open-source tool for microbiome analysis
Renderers and renderer extensions for JupyterLab
Updated
Apr 9, 2022
Jupyter Notebook
SeqAn's official repository.
Efficient pythonic random access to fasta subsequences
Updated
May 18, 2022
Python
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
A Go package for engineering organisms.
A Java API for high-throughput sequencing data (HTS) formats.
Updated
May 17, 2022
Java
Syntax highlighting for computational biology
Updated
Apr 10, 2022
Shell
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Nov 19, 2021
Python
A collection of scripts and notes related to genomics and bioinformatics
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Updated
May 18, 2022
Jupyter Notebook
A robust and fast clustering method for amplicon-based studies
Randomly subsample sequencing reads to a specified coverage
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Updated
Nov 15, 2021
Perl
Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
A DNA Sequence Alignment/Map (SAM) library for Clojure
Updated
May 9, 2022
Clojure
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Updated
May 16, 2022
Perl
Software for prediction of plasmid sequences in metagenomic assemblies
Updated
Jun 28, 2021
Python
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Updated
Jul 19, 2021
JavaScript
🚀 seqfu - Sequece Fastx Utilities
Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language.
Updated
Mar 3, 2017
Python
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
VAPiD: Viral Annotation and Identification Pipeline
Updated
Jun 24, 2021
Shell
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Parse and process FASTA and FASTQ formatted files of biological sequences.
Updated
Mar 29, 2022
Julia
Generate unique KMERs for every contig in a FASTA file
FASTA and FASTQ parsing in Rust
Updated
Nov 12, 2020
Rust
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