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histolab / histolab

Star 161
Open

`LocalOtsuThreshold` should return a `np.ndarray`

alessiamarcolini
alessiamarcolini commented May 5, 2022

Describe the bug
LocalOtsuThreshold should return a binary mask as np.ndarray, like its "sibling" OtsuThreshold

  1. We should not apply np_to_pil before returning, but threshold_to_mask (like OtsuThreshold)
  2. The docstrings of LocalOtsuThreshold and local_otsu_threshold are different, while they should be the same.
  3. Type hints need to be fixed as well to reflect the new
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bug good first issue
slideflow

jamesdolezal / slideflow

Star 37
Open

Make WSI iterable

jamesdolezal
jamesdolezal commented Apr 21, 2022

Feature

Currently, WSI objects use a .build_generator() method to iterate through image tiles from the slide. For ease of use, WSI objects should be directly iterable.

Pitch

Iterable WSI objects which return ((loc_x, loc_y), image) for each image in the slide.

Alternatives

The current alternative is to call WSI.build_generator(), which is non-obvious to the end us

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enhancement good first issue

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