#
multiqc
Here are 30 public repositories matching this topic...
Test data for MultiQC. See https://github.com/ewels/MultiQC
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Apr 16, 2022 - HTML
A miniature example of a MultiQC plugin.
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May 17, 2018 - Python
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
bioinformatics
quality-control
mapping
bioinformatics-pipeline
multiqc
star
hisat2
rna-seq-analysis
featurecounts
rna-seq-mapping
fastqc
rna-seq-pipeline
htseq-count
rna-seq-qc
rnaseqpipeline
trimmomatic
rna-seq-aligner
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Mar 29, 2022 - R
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
ggplot2
shiny
rnaseq
multiqc
star
bash-script
shiny-apps
bash-scripting
10xgenomics
singlecell
smallrna
mirdeep2
scrna
smallrna-seq
seurat
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Oct 14, 2021 - Shell
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
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Feb 8, 2022 - Python
A simple fastp-MultiQC nextflow pipeline
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Feb 16, 2022 - Nextflow
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
bioinformatics
snakemake
json-schema
conda
multiqc
kallisto
reproducible-workflows
fastqc
snakemake-workflow
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Aug 23, 2019 - Python
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
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Feb 14, 2019 - Python
Generation Quality Controls Files for MSK-ACCESS
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Feb 7, 2022 - Common Workflow Language
Website files for MultiQC. See https://github.com/ewels/MultiQC
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Mar 2, 2022 - HTML
Snakemake workflow for Salmon quantification and FastQC quality controls
bioinformatics-pipeline
multiqc
salmon
snakemake-workflows
reproducible-workflows
fastqc
rnaseq-pipeline
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Mar 20, 2021 - Python
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
python
shell
workflow
snakemake
liftover
bioinformatics-pipeline
multiqc
reproducibility
transcriptomics
single-cell-rna-seq
fastqc
cellranger
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Jan 27, 2022 - Python
script for running multiple metagenome filtering programs using Docker containers
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May 1, 2020 - Shell
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
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May 11, 2022 - Python
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
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Apr 24, 2017 - Python
Map and post-process your bams for SNP calling
reproducible-research
bioinformatics-pipeline
multiqc
bwa
whole-exome-sequencing
snakemake-workflows
fastqc
gatk4
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Mar 10, 2021 - Python
Classification of RNA-Seq samples using circRNA expression
machine-learning
rna-seq
multiqc
fastq
rna-seq-analysis
circrna
fastq-dump
circrna-prediction
fastqc
rna-seq-pipeline
fastp
rna-seq-classification
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Sep 19, 2018 - HTML
Docker to run multiqc for combining bioinformatic log reports
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Mar 15, 2018
Count your fastq-formatted rna-seq reads with Salmon
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Apr 10, 2020 - Python
Exploring Bioinformatics pipelines
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Aug 12, 2021 - HTML
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