The Wayback Machine - https://web.archive.org/web/20220410165747/https://github.com/topics/genomics-visualization

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genomics-visualization

Here are 119 public repositories matching this topic...

thackl / gggenomes

A grammar of graphics for comparative genomics

ggplot2 comparative-genomics genomics-visualization biological-data ggplot-extension

Updated Mar 30, 2022
R

wurmlab / sequenceserver

Open

Add "share" link on the left under downloads

yannickwurm commented Dec 19, 2021

It isn't obvious to users that a search result URL is stable (until deleted).

To make this more obvious, we should add an explicit
Share results section, with a "Copy URL to clipboard" text that does what it says

Read more

feature good first issue

Open

Non-executable files set with executable permissions

2

Open

bed or gff alternate table format outputs

1

Find more good first issues

bernatgel / karyoploteR

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

bioinformatics genome data-visualization rstats bioconductor genomics-visualization plotting-in-r

Updated Jan 19, 2022
R

ucscGenomeBrowser / kent

UCSC Genome Browser source tree. Stable branch: "beta".

bioinformatics computational-biology data-visualisation genomics-visualization

Updated Apr 10, 2022
C

Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine

Genomic Interactive Visualization Engine

javascript genomics-visualization epigenetic-data genomic-interactions

Updated Feb 11, 2022
JavaScript

stevekm / IGV-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

genomics igv genomics-visualization

Updated Nov 12, 2020
Python

brentp / jigv

Sponsor

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

genomics genomics-visualization

Updated Jul 1, 2021
Nim

bigomics / omicsplayground

Visual self-service analytics platform for big omics data.

rna-seq genomics omics rna-seq-analysis genomics-visualization

Updated Apr 9, 2022
R

mixOmics

mixOmicsTeam / mixOmics

Development repository for the Bioconductor package 'mixOmics '

r genomics rstats bioconductor r-pkg r-package omics multivariate-analysis multivariate-statistics genomics-visualization r-project genomics-data rstats-package

Updated Apr 10, 2022
R

RCollins13 / HumanIdiogramLibrary

Resource of human chromosome schematics & images

genomics genetics resources data-visualization genomics-visualization

Updated Dec 17, 2020

MicrobeTrace

CDCgov / MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv cdc phylogenomics phylogeny sequence-alignment genomic-data-analysis genomics-visualization pathogens

Updated Apr 9, 2022
TypeScript

thierrygosselin / radiator

RADseq Data Exploration, Manipulation and Visualization using R

visualization genomics genetics filter outliers imputation missingness gbs normalization radseq radseq-data genomic-data-analysis genotype-likelihoods genomics-visualization genotyping-by-sequencing batch-effects heterozygosity artifacts-detection paralogs outliers-detection

Updated Dec 22, 2021
R

brentp / seqcover

Sponsor

seqcover allows users to view coverage for hundreds of genes and dozens of samples

genomics hacktoberfest genomics-visualization

Updated Apr 9, 2021
Nim

daler / trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

python genomics-visualization

Updated Nov 12, 2021
Python

covviz

brwnj / covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

coverage nextflow genomics-visualization

Updated Feb 17, 2022
HTML

LyonsLab / coge

CoGe (Comparative Genomics) Platform

python bioinformatics rna-seq genomics perl comparative-genomics coge synteny genomics-visualization

Updated Dec 21, 2021
Perl

ezancestry

arvkevi / ezancestry

Easy genetic ancestry predictions in Python

genomics data-visualization ancestry dimensionality-reduction genomics-visualization personal-genomics genotypes streamlit

Updated Apr 6, 2022
Python

gtrichard / deepStats

deepStats: a stastitical toolbox for deeptools and genomic signals

bootstrap dnase-seq rna-seq dataviz genomics sequencing statistical-analysis chip-seq atac-seq galaxy vizualize-data genomics-visualization mnase-seq deeptools genomic-signals

Updated Jul 5, 2021
R

thierrygosselin / stackr

stackr: an R package to run stacks software pipeline

genomics genetics filter rad gbs radseq radseq-data genomic-data-analysis genotype-likelihoods genomics-visualization genotyping-by-sequencing stackr

Updated Nov 5, 2020
R

s1monj / nft-peppers

Generative Art NFTs From Genomic Data

javascript cytoscapejs animejs genomics-visualization genomics-data

Updated Oct 11, 2021
JavaScript

G3viz / g3viz

Lollipop-diagram to interactively visualize genetic mutations

bioinformatics variants genomics-visualization lollipop-plot visualize-mutation-data

Updated Feb 27, 2021
JavaScript

G3viz / g3lollipop.js

Lollipop-diagram to visualize genomic mutations

bioinformatics variants genomics-visualization lollipop-plot visualize-mutation-data

Updated Sep 3, 2019
JavaScript

czheluo / Circos-Pipeline

circos pipeline

data-visualization circos-graphs genomics-visualization

Updated May 8, 2021
Perl

BLSS

Binomica-Labs / BLSS

A suite of unique bioinformatics tools for the brave explorer.

bioinformatics genomics dna bioinformatics-pipeline protein-sequences dna-sequences genomics-visualization

Updated Jun 21, 2019
C#

NAL-i5K / genomics-workspace

Open

Document file directories

hsiaoyi0504 opened Sep 26, 2018

good first issue

Open

Document of tests

1

edgecase

LankyCyril / edgecase

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

bioinformatics genomics repeats bioinformatics-pipeline haplotypes genomics-visualization long-reads telomeres long-read-sequencing

Updated Feb 7, 2022
Python

biojs / biojs-frontend

Frontend repository for BioJS.

bioinformatics proteomics biojs genomics-visualization bioinformatics-visualization

Updated Mar 2, 2022
Vue

epiviz / epiviz-desktop-app

Desktop app for epiviz

desktop-app genomics genomics-visualization epiviz

Updated Jul 7, 2020
JavaScript

outbreak-info / R-outbreak-info

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

genomics rstats epidemiology genomics-visualization genomics-data rstats-package

Updated Apr 5, 2022
R

hoffmangroup / segway

Application for semi-automated genomic annotation.

python annotation genomics-visualization epigenomics genomics-data-visualization

Updated Mar 11, 2022
Shell

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