Brain Modeling Toolkit

NEURON Simulator

📝 Manage your Zettelkasten in {n}vim.

Simulator optimized for large scale neural network simulations.

A Python interface for ABF files

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Probabilistic question-asking system: the program asks, the users answer. The minimal goal of the program is to identify what the user needs (a target), even if the user is not aware of the existence of such thing/product/service. The maximal goal is to achieve the processing power of a single neuron of a human brain on a single PC. Interactions with billions of other computers should achieve human-level intelligence (AGI).

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

A virtual optogenetics laboratory

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

Collection of Python 3 tools to work with neuron data from CATMAID servers

Language server implementation for neuron

📊 Gene expression in neuroexpresso database

NEURON User Interface

Tutorial for understanding how to use NEURON simulation environment

Auto-generate a Table of Contents for your Neuron Zettelkasten.

Ring network model test to demonstrate the use of CoreNEURON

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

Brilliantly Radical Artificially Intelligent Neural Machine

Plot, edit, generate and analysis neuron morphologies! and a lot more...

Implementing Artificial Neural Network training process in Python

Tutorial Series for Spiking Neural Networks 🔥

Python tools to interact with Google brainmaps API

Simulate the signals of brain.

Golang framework that uses both code generation and interfaces to create services and microservices.

LPU class with support for various neuron and synapse models

Neural Network Library for Golang

(Mirror) Neuron Helper Scripts