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1. hpc_data_download hpc_data_download Public

   Smart HPC Data Download Pipeline. An Rsync-based wrapper to safely pull large datasets from your remote Linux server or HPC to your local workstation, featuring source-based cryptographic hashing t…

   Shell

2. hpc_data_upload hpc_data_upload Public

   Resilient HPC Data Upload Pipeline. Securely transfer massive datasets (e.g., NGS sequencing) from your local machine to any High-Performance Computing (HPC) cluster with native cryptographic audit…

   Shell

3. hpc_ssh_multiplexing hpc_ssh_multiplexing Public

   Automated SSH Multiplexing for HPC. Create a persistent, secure 3-hour SSH tunnel to your remote server. Bypass repetitive password and 2FA prompts to streamline your data science and bioinformatic…

   Shell

4. rieux_bacass rieux_bacass Public

   An automated, high-performance wrapper for the [nf-core/bacass](https://nf-co.re/bacass) pipeline, designed specifically for the Rieux HPC cluster.

   Shell

5. rieux_sarek rieux_sarek Public

   CLI wrapper for nf-core/sarek optimized for the Fiocruz Rieux HPC cluster

   Shell

6. rieux_short_reads_mapping rieux_short_reads_mapping Public

   CLI wrapper for mapping short NGS reads to reference sequences optimized for the Fiocruz Rieux HPC cluster

   Shell