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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Makefile 5 10

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 20 29

  3. docs docs Public archive

    Python 21 59

Repositories

Showing 10 of 82 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 4 3 3 Updated May 19, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 10 4 2 Updated May 19, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 0 Updated May 19, 2026
  • homepage Public

    QIIME 2 Homepage

    qiime2/homepage’s past year of commit activity
    Astro 0 MIT 0 0 2 Updated May 18, 2026
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 43 27 (2 issues need help) 2 Updated May 18, 2026
  • gut-to-soil-tutorial Public

    The gut-to-soil axis microbiome analysis tutorial

    qiime2/gut-to-soil-tutorial’s past year of commit activity
    Makefile 1 5 3 1 Updated May 15, 2026
  • q2galaxy Public

    Generate Galaxy tool descriptions automatically from QIIME 2 actions.

    qiime2/q2galaxy’s past year of commit activity
    Python 20 BSD-3-Clause 17 9 1 Updated May 15, 2026
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots’s past year of commit activity
    Python 3 BSD-3-Clause 6 11 3 Updated May 14, 2026
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 20 BSD-3-Clause 29 12 1 Updated May 12, 2026
  • q2-dada2 Public

    QIIME 2 plugin wrapping DADA2

    qiime2/q2-dada2’s past year of commit activity
    Python 24 BSD-3-Clause 40 11 (1 issue needs help) 4 Updated May 12, 2026

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