Python & bash

• momics: Cloud-native storage and query infrastructure for multi-omics data
• hicstuff: Lightweight library/pipeline to generate and handle Hi-C data
• instagraal: Large genome reassembly based on Hi-C data
• metator: Metagenomic binning based on Hi-C data
• nf-metator: Scalable containerized processing of metagenomic data with metator in nextflow
• autotinymapper: Email-driven automation wrapper around tinyMapper.sh for maestro HPC
• tinyMapper: Versatile pipeline to process a variety of genome-wide assays
• autobcl2fastq: Automatically fetch data from a remote sequencer directory, demultiplex fastq files, trim adaptors and run some preliminary QCs

Bioconductor packages

Doc 📘	Bioconductor 🧬	Bioc builds ⚙️	Github 📦	Github checks 🧾	Lifecycle 🍃
Doc	tidyCoverage	Bioc release: Bioc devel:	tidyCoverage
Doc	plyinteractions	Bioc release: Bioc devel:	plyinteractions
Doc	OHCA	Bioc release Bioc devel	OHCA
Doc	BiocBook	Bioc release: Bioc devel:	BiocBook
Doc	HiCExperiment	Bioc release: Bioc devel:	HiCExperiment
Doc	HiContacts	Bioc release: Bioc devel:	HiContacts
Doc	HiCool	Bioc release: Bioc devel:	HiCool
Doc	HiContactsData	Bioc release: Bioc devel:	HiContactsData
Doc	DNAZooData	Bioc release: Bioc devel:	DNAZooData
Doc	fourDNData	Bioc release: Bioc devel:	fourDNData
Doc	VplotR	Bioc release: Bioc devel:	VplotR
Doc	periodicDNA	Bioc release: Bioc devel:	periodicDNA	-