You can't just call a function like that. What you need to understand is that javascript runs on the client, and your function is on the server. What you need to do is make a request to the server, just like you would when loading a page, so for this you need an Action (make sure it is a POST action as we will be "posting" the request). This action can be as short as just calling the function you need:
[HttpPost]
public ActionResult RunAction(string option1)
{
//if needed, you can use the "option1" value to determine the UserProgram to pass
UserProgram userProgram = new UserProgram();
Run(userProgram);
//you can return a JSON reuslt that you can evaluate back at the client
return Json(new { @Success = true, @MyString = "a string" });
}
Then you want to use ajax to call the function from the client (javascript), for this I would recommend JQuery as it makes things much easier using post:
$.post('@Url.Action("RunAction", "MyController")',
{
option1: "some optional value"
},
function (data) {
alert("success!");
//here you have access to your JSON result via data, for example:
//data.Success = true
//data.MyString = "a string"
}
);