(Q39037744)

8 September 2017

Clustering of reads with alignment-free measures and quality values (English)

1 reference

8 September 2017

Matteo Comin

1

1 reference

8 September 2017

Andrea Leoni

series ordinal

2

1 reference

8 September 2017

Michele Schimd

series ordinal

3

1 reference

8 September 2017

28 January 2015

1 reference

8 September 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=25691913

https://europepmc.org/articles/PMC4331138

16 July 2025

work available at URL

file format

HyperText Markup Language

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A25691913

https://europepmc.org/articles/PMC4331138?pdf=render

16 July 2025

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A25691913

http://link.springer.com/content/pdf/10.1186/s13015-014-0029-x.pdf

16 July 2025

1 reference

https://api.crossref.org/works/10.1186/S13015-014-0029-X

http://link.springer.com/article/10.1186/s13015-014-0029-x/fulltext.html

16 July 2025

file format

HyperText Markup Language

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1186/S13015-014-0029-X

http://link.springer.com/content/pdf/10.1186/s13015-014-0029-x

16 July 2025

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1186/S13015-014-0029-X

Algorithms for Molecular Biology

16 July 2025

published in

1 reference

8 September 2017

10

1 reference

8 September 2017

4

1 reference

Creative Commons Attribution 4.0 International

8 September 2017

start time

28 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Centroid based clustering of high throughput sequencing reads based on n-mer counts

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

SEED: efficient clustering of next-generation sequences

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Dindel: accurate indel calls from short-read data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Classification of protein sequences by means of irredundant patterns

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-free sequence comparison (I): statistics and power

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Comparison study on k-word statistical measures for protein: from sequence to 'sequence space'.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Mapping short DNA sequencing reads and calling variants using mapping quality scores

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Microbiology in the post-genomic era.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Whole genome molecular phylogeny of large dsDNA viruses using composition vector method

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

CVTree: a phylogenetic tree reconstruction tool based on whole genomes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-free sequence comparison-a review

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Distributional regimes for the number of k-word matches between two random sequences

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

A measure of the similarity of sets of sequences not requiring sequence alignment

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Basic local alignment search tool

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-free phylogeny of whole genomes using underlying subwords

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Alignment-free sequence comparison (II): theoretical power of comparison statistics

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Assemblies: the good, the bad, the ugly

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

A statistical method for alignment-free comparison of regulatory sequences

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331138

Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13015-014-0029-X

The irredundant class method for remote homology detection of protein sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25691913

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Peptoniphilus coli sp. nov. and Peptoniphilus urinae sp. nov., isolated from humans

1 reference

30 December 2024

https://opencitations.net/index/api/v1/citations/10.1007/S00203-022-03044-Z

Identifiers

DOI

1 reference

8 September 2017

journals/almob/CominLS15

1 reference

DBLP Dataset 2021-01-02

Dimensions publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s13015-014-0029-x

1 reference

8 September 2017

1 reference