Species: Mus musculus (mouse)
General information
Scientific name
Mus musculus
Common name
mouse
Species ID
Genome source
Experiment list
Gene expression call files
Bgee provides calls of presence/absence of expression. Each call corresponds to a unique combination of a gene, an anatomical entity, a life stage, a sex, and a strain, with reported presence or absence of expression. More information in our documentation.
Anatomical entities only
- File without advanced column:
Mus_musculus_expr_simple.tsv.gz(160.6 MB) - File with advanced column:
Mus_musculus_expr_simple.tsv.gz(329.0 MB)
Anatomical entities, developmental stages, sexes and strains
- File without advanced column:
Mus_musculus_expr_simple_all_conditions.tsv.gz(724.6 MB) - File with advanced column:
Mus_musculus_expr_advanced_all_conditions.tsv.gz(1.3 GB)
Processed expression value files
Bgee provides annotations and experiment annotations, and processed expression values. More information in our documentation.
Affymetrix
- Experiments/chips annotations and meta data:
Mus_musculus_Affymetrix_experiments_chips.tar.gz(513.6 KB) - Data (signal intensities):
Mus_musculus_Affymetrix_probesets.tar.gz(1.8 GB)
RNA-Seq
- Experiments/libraries annotations and meta data:
Mus_musculus_RNA-Seq_experiments_libraries.tar.gz(210.7 KB) - Data (read counts, TPMs):
Mus_musculus_RNA-Seq_read_counts_TPM.tar.gz(2.8 GB)
Full length RNA-Seq
- Experiments/libraries annotations and meta data:
Mus_musculus_Full_Length_SC_RNA-Seq_experiments_libraries.tar.gz(54.0 KB) - Processed expression values (read counts, TPMs)
Mus_musculus_Full-Length_SC_RNA-Seq_read_counts_TPM.tar.gz(396.7 MB) - Processed H5AD data per cell (read counts)
Mus_musculus_full_length_h5ad.tar.gz(59.5 MB)
Droplet based RNA-Seq
- Experiments/libraries annotations and meta data:
Mus_musculus_Droplet_Based_SC_RNA-Seq_experiments_libraries.tar.gz(7.5 KB) - Processed expression values (UMI counts, CPMs)
Mus_musculus_Droplet-Based_SC_RNA-Seq_read_counts_CPM.tar.gz(292.7 MB) - Processed H5AD data per cell (UMI counts)
Mus_musculus_droplet_based_h5ad.tar.gz(871.6 MB)