🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

A Ruby toolset for interacting with the OStatus suite of protocols

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

RNAseq pipeline centered on Salmon

Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data

OStatus Specification

A salmon plugin for WordPress

A JavaScript interpreter for Homespring

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

Code for smooth interactions with the salvage database

연어봇 - SalmonBot

Frontend code of salmonfit.com

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Development site for an integrated population model for Auke Creek coho salmon

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD