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58 Open 92 Closed
58 Open 92 Closed
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Issues list

did not converge in 25 iterations
#177 opened Oct 27, 2022 by ljy-sys
RunHarmony - Warning: Invalid name supplied, making object name syntactically valid
#176 opened Oct 26, 2022 by lucygarner
ups and downs in the standard deviation
#175 opened Oct 19, 2022 by showteeth
Too many small clusters found after integrating data by harmony
#174 opened Oct 19, 2022 by SeadonXing
Error in dplyr::select(): ! <text>:1:5: unexpected symbol
#173 opened Oct 17, 2022 by lucygarner
4
Appropriate batch variable for specific experimental design
#172 opened Oct 17, 2022 by lucygarner
Error in harmonyObj$cluster_cpp(): element-wise pow()
#171 opened Oct 14, 2022 by lisch7
7
Error in harmonyObj$init_cluster_cpp
#166 opened Sep 24, 2022 by yoshihiko1218
5
can harmony integrate 10X and Smart-Seq2 derived data?
#164 opened Sep 15, 2022 by bijuissacch224610
1
Usage with big datasets (>2 M cells)
#161 opened Aug 11, 2022 by erosix
How to get the data set of cell_lines
#160 opened Aug 9, 2022 by xuqiu-qiu
seurat::key in RunHarmony results in an error
#159 opened Aug 5, 2022 by DivyaRavichandar
Error in Runharmony
#158 opened Jul 27, 2022 by evaniali
values for lambda and theta
#157 opened Jun 29, 2022 by MatsuSui
1
Can I split large gene matrix by rows and run harmony in parallel
#155 opened Jun 14, 2022 by jiajinlongkang
1
General question about use case
#154 opened Jun 14, 2022 by Dillon214
1
Correct procedure for subclustering
#153 opened May 10, 2022 by RolantusdataExp
Flash back problem on win10
#152 opened May 1, 2022 by zyb1984
Bug: dims.use is not working
#151 opened Mar 25, 2022 by andreaskapou
3
messy strings in the UMAP after harmony integration
#150 opened Mar 24, 2022 by chansigit
No error message if batch labels are wrong
#149 opened Mar 16, 2022 by adamh-broad
Harmonizing with RNA and ADT data
#148 opened Feb 18, 2022 by tcswarbear
using covariates for integrating 10x Visium slides
#147 opened Jan 5, 2022 by sdwien
Harmony embedding for FindMarker?
#146 opened Nov 22, 2021 by Arushiii
Running Harmony with SingleCellExperiment object
#145 opened Nov 11, 2021 by guillermoturiel
3
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