nextflow-io nextflow Discussions

Discussions

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  Is it expected that an empty .nextflow/plr is created in the current dir when calling nextflow pull?

  SamStudio8 asked May 12, 2023 in Q&A · Unanswered

  

  

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  Any way to dump config similar to nextflow config from inside a pipeline?

  tfenne asked May 12, 2023 in Q&A · Unanswered

  

  

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  How to combine a value and a queue channel

  bounlu asked May 11, 2023 in Q&A · Answered

  

  

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  What is the command used with publishDir copy

  blanleung asked May 7, 2023 in Q&A · Unanswered

  

  

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  Handle bad submissions in a plugin

  oxedions asked May 2, 2023 in Q&A · Answered

  

  

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  Error executing process > 'get_software_versions'

  MinLuke asked May 8, 2023 in Q&A · Unanswered

  

  

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  How to get status of each task?

  Nathanrown asked May 5, 2023 in Q&A · Unanswered

  

  

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  Using tap with pipes in DSL2

  glormph asked May 5, 2023 in Q&A · Unanswered

  

  

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  FATAL: container creation failed with singularity profile

  nhhaidee asked May 3, 2023 in Q&A · Unanswered

  

  

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  connection refused

  Claudio-dur asked May 3, 2023 in Q&A · Unanswered

  

  

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  Nextflow language improvements

  bentsherman started Aug 9, 2022 in Show and tell

  

  

  

  

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  Removing a string from a list in the nf script section with groovy - multiple solutions do not work

  colindaven asked Apr 21, 2023 in Q&A · Unanswered

  

  

  

  

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  Collecting multiple directories with the same name in one process

  lang/processes

  Lehmann-Fabian started Mar 26, 2021 in General

  

  

  

  

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  Specifying fields with Nextflow log command

  georgiesamaha asked Apr 22, 2023 in Q&A · Answered

  

  

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  Can't lock file history & Can't update history file

  Nathanrown asked Apr 19, 2023 in Q&A · Answered

  

  

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  Convert value channel of length > 1 into list inside process

  MajoroMask asked Apr 20, 2023 in Q&A · Answered

  

  

  

  

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  AWS Fusion integration is less efficient than NO Fusion when concatenating a large number of files

  fusion

  wikiselev asked Apr 6, 2023 in Q&A · Unanswered

  

  

  

  

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  FileAlreadyExistsException when using copyTo on a directory that already exists

  nh13 asked Apr 19, 2023 in Q&A · Answered

  

  

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  Intermittent container settings error with Azure pool

  platform/azure-batch

  pditommaso asked Dec 20, 2021 in Q&A · Unanswered

  

  

  

  

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  Alternative channel usage ifempty

  lang/operators

  narsapuramvijaykumar asked Apr 14, 2023 in Q&A · Unanswered

  

  

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  AWS Batch: What happens after maxTransferAttempts?

  storage/aws-s3

  arareko asked Mar 6, 2023 in Q&A · Answered

  

  

  

  

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  The nextflow script reports an error in delivering the task on the slurm

  platform/slurm

  heweihuang asked Jun 9, 2022 in Q&A · Unanswered

  

  

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  Compilation error - token recognition

  davidaray asked May 20, 2022 in Q&A · Answered

  

  

  

  

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  Nextflow exits with AwsBatch executor - S3 multipart upload error

  storage/aws-s3

  tamuanand asked Dec 12, 2021 in Q&A · Unanswered

  

  

  

  

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  awk: command not found

  zillurbmb51 asked Apr 7, 2023 in Q&A · Unanswered

  

  

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