motifs

An open-source library of algorithms to analyse time series in GPU and CPU.

A performant, powerful query framework to search for network motifs

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

MetaLogo: a heterogeneity-aware sequence logo generator and aligner

A Java library for Matrix Profile

DYnamic MOtif-NoDes (DYMOND) is a dynamic network generative model based on temporal motifs and node behavior.

Local Motif Clustering on Time-Evolving Graphs, KDD' 2020

Ember Communication Patterns

A Pythonic interface to query and access JASPAR transcription factor motifs

Source code for VLDB 2020 paper "Hypergraph Motifs: Concepts, Algorithms, and Discoveries."

A proof-of-concept library for motif analysis using MDL techniques.

Python bindings for the TFM-Pvalue program.

This application searches inside a text sequence for words that resemble those inside a list of similar words.

Source code for KAIS (2023) paper "Temporal Hypergraph Motifs" and ICDM 2021 paper "THyMe+: Temporal Hypergraph Motifs and Fast Algorithms for Exact Counting."

Benchmarks collection for GRECO TFBS Benchmarking Initiative

modified exact discovery of time series motifs

Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

An object-oriented Python library for simulating biological sequences

Repository for "Data Mining - Advanced Topics and Applications" projects exam.

Python (3.8+) implementation of structural similarity and complementarity coefficients for undirected (un)weighted networks based on efficient counting of 2- and 3-paths (triples and quadruples) and 3- and 4-cycles (triangles and quadrangles).