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sge

Here are 62 public repositories matching this topic...

nextflow

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Nov 29, 2022
Groovy

implus / PytorchInsight

a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

Updated Dec 8, 2020
Python

mllg / batchtools

Tools for computation on batch systems

cran r hpc docker-swarm parallel-computing slurm sge torque lsf openlava high-performance-computing reproducibility hpc-clusters batchjobs batchexperiments

Updated Dec 14, 2021
R

mschubert / clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

ssh cluster slurm sge lsf high-performance-computing r-package

Updated Nov 20, 2022
R

HenrikBengtsson / future.batchtools

🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools

package r hpc job-scheduler parallel distributed-computing slurm sge torque pbs

Updated Aug 27, 2022
R

Ensembl / ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

mysql python java docker pipeline sqlite perl docker-swarm postgresql slurm sge htcondor lsf ehive ensembl high-performance-computing pbs-pro workflow-management-system pbspro

Updated Oct 3, 2022
Perl

datasnakes / OrthoEvolution

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Updated Nov 14, 2022
Python

GarrettJenkinson / informME

An information-theoretic pipeline for methylation analysis of WGBS data

bash bioinformatics r cpp matlab information-theory parallel-computing slurm next-generation-sequencing sge methylation parameter-estimation ising-model

Updated Apr 9, 2019
MATLAB

wangkaisine / SGE-On-CentOS

Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7

Updated Nov 12, 2018

HECBioSim / Longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

Updated Jan 13, 2020
Python

FlyPythons / DAGflow

Module to create DAG Task and Manage Task on SGE

python workflow pipeline-framework sge

Updated Feb 1, 2019
Python

baiyongan / lsf-handbook

IBM LSF manual translation and practical experience

hpc cluster job-scheduler handbook slurm sge lsf manual high-performance-computing ibm lsf-jobs pbs hpc-cluster lsf-manual

Updated Nov 26, 2022
HTML

relleums / qstat

parse Grid Engine qstat job info list into a list of python dicts

python queue sge qsub qstat sun-grid-engine

Updated May 19, 2022
Python

Adigorla / xgap

xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.

bioinformatics genomics hpc ngs slurm pipeline-framework sge bioinformatics-pipeline snv indels

Updated Oct 21, 2020
Python

yodeng / runjob

runjob is a program for managing a group of related jobs running on a compute cluster

python hpc cluster sge

Updated Nov 28, 2022
Python

HenrikBengtsson / future.BatchJobs

🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]

package r hpc job-scheduler parallel parallel-computing distributed-computing slurm sge torque pbs

Updated Feb 8, 2021
R

zenotech / MyCluster

Utilities to support interacting with multiple HPC clusters

python hpc slurm sge lsf python3 gridengine scrutinizer multiple-hpc-clusters mycluster pbs-torque hpc-cluster pypi-package

Updated Jul 29, 2022
Python

HenrikBengtsson / future.clustermq

🚀 R package future.clustermq: A Future API for Parallel Processing using 'clustermq'

package r hpc parallel distributed-computing slurm sge torque lsf pbs

Updated Nov 14, 2022
R

zengxiaofei / PJM

A simple job manager for PBS (Portable Batch System)

sge torque bioinformatics-pipeline pbs

Updated Sep 14, 2017
Python

zengxiaofei / snodes

Some scripts for managing nodes and jobs on SGE

sge grid-engine cluster-management

Updated May 8, 2019
Python

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