Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

Popular repositories

ga4gh-schemas Public archive

Models and APIs for Genomic data. RETIRED 2018-01-24

Python 214 114
benchmarking-tools Public

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

HTML 165 43
ga4gh-server Public archive

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

Python 94 91
workflow-execution-service-schemas Public

The WES API is a standard way to run and manage portable workflows.

72 30
task-execution-schemas Public

70 26
vrs Public

Extensible specification for representing and uniquely identifying biological sequence variation

Jupyter Notebook 53 27

data-security Public

Ruby 21 15 3 4 Updated Dec 20, 2022
quality-control-wgs Public
Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

2 Apache-2.0 0 1 1 Updated Dec 20, 2022
refget-compliance-suite Public
Repository for the Google Summer of Code for the Reference Retrieval API

Python 6 Apache-2.0 5 2 6 Updated Dec 20, 2022
fasp-scripts Public

Jupyter Notebook 10 Apache-2.0 6 9 2 Updated Dec 20, 2022
ismb-2022-ga4gh-tutorial Public
ISMB 2022 tutorial on FASP and Starter Kit

Jupyter Notebook 3 Apache-2.0 1 5 1 Updated Dec 20, 2022
vrs-python Public
GA4GH Variation Representation Python Implementation

Jupyter Notebook 35 Apache-2.0 16 17 2 Updated Dec 19, 2022
drs-compliance-suite Public
Tests to verify the compliance of a DRS implementation with GA4GH DRS specification

Python 0 Apache-2.0 0 6 0 Updated Dec 16, 2022
task-execution-schemas Public

70 Apache-2.0 26 39 6 Updated Dec 15, 2022
seqcol-spec Public
Website for DRAFT specification docs for GA4GH Sequence Collections.

HTML 5 3 19 6 Updated Dec 15, 2022
standards-schema Public
A schema for describing GA4GH Standards

HTML 0 0 0 3 Updated Dec 13, 2022

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