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openslide

Here are 33 public repositories matching this topic...

libvips / libvips

A fast image processing library with low memory needs.

c svg pdf imagemagick png cpp jpeg tiff graphicsmagick image-processing gif webp libvips openexr nifti openslide heic pdfium

Updated Mar 13, 2023
C

ysbecca / py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

deep-learning lmdb openslide svs py-wsi openslide-python

Updated Apr 25, 2020
Jupyter Notebook

zhaoxuanma / Deeplearning-digital-pathology

Full package for applying deep learning to virtual slides.

caffe deep-learning tensorflow keras openslide digital-pathology

Updated Sep 7, 2018
Python

haranrk / DigiPathAI

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

python gui deep-learning segmentation cancer-research openslide wsi medical-image-analysis

Updated Nov 26, 2022
JavaScript

jgamper / compay-syntax

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

slide-images medical-imaging openslide whole-slide-imaging computational-pathology pathology-image wsis whole-slide-image

Updated Nov 22, 2022
Python

GoogleCloudPlatform / wsi-to-dicom-converter

Conversion tool/library for converting whole slide images to DICOM

dicom openslide wsi

Updated Dec 14, 2022
C++

lucasrla / wsi-preprocessing

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

pytorch libvips preprocessing fastai openslide pathology whole-slide-imaging wsi histopathology pyvips

Updated Sep 3, 2020
Python

DIMAthe47 / slide_viewer_47

A pyqt5 widget for viewing whole-slide images with Openslide

pyqt5 python3 openslide whole-slide-imaging

Updated Feb 3, 2018
Python

DSLituiev / slideslicer

a toolbox for manipulation of digital pathology slides and annotations

tissue annotations mask histology openslide pathology wsi slideslicer read-slides

Updated Aug 11, 2020
Jupyter Notebook

smujiang / WSITools

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

extraction image-processing patch openslide digital-pathology wis pathological

Updated Mar 3, 2023
Python

steven22tom / LabelSlide

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

deep-learning annotations python3 openseadragon openslide digital-pathology pathology labeltool pathology-image

Updated Jun 28, 2021
JavaScript

deephealthproject / ecvl

European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.

computer-vision cpp computer-graphics image-processing dicom gpu-acceleration openslide fpga-acceleration ecvl

Updated Apr 29, 2022
C++

InsightSoftwareConsortium / ITKIOOpenSlide

An ITK ImageIO module for the OpenSlide library.

microscopy openslide openslide-python itk-module

Updated May 31, 2022
C++

hurryhuang1007 / Xslide

An application that can quickly view large images like .tif, .svs, .bif, .hdpi, .vms and .mrxs file(s).

viewer vms deep-zoom-images openslide svs vips tif hdpi mrxs

Updated Sep 21, 2021
JavaScript

jopo666 / HistoPrep

Preprocessing module for large histological images

medical-imaging cut preprocess openslide medical-image-processing tissue-classification pathology medical-image-analysis histological-images pathology-image tissue-analysis histological-slides slide-image

Updated Mar 13, 2023
Python

girder / large_image_wheels

manylinux wheel files for girder/large_image dependencies

binary gdal libvips mapnik wheels openslide libtiff pyproj openslide-python pyvips pylibtiff glymur python-javabridge

Updated Jan 26, 2023
Dockerfile

shaziaakbar / deep-openslide

A library for training deep neural networks using pathology data by accessing patches on-the-fly

openslide pathology

Updated Oct 12, 2018
Python

yujota / openslider-tfpy

TensorFlow cunstom runner to read micro images from whole slide images.

tensorflow openslide pathology wsi

Updated May 14, 2019
Jupyter Notebook

slideToolKit

swvanderlaan / slideToolKit

slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.

cellprofiler histology openslide

Updated Feb 17, 2023
Shell

TensorBoard_Plugin_WSI

IAmS4n / TensorBoard_Plugin_WSI

A plugin for TensorBoard to show WSI images. The plugin is based on Deep Zoom Image (DZI).

visualization plugin viewer tensorboard openslide dzi deepzoom wsi tensoflow histopathology wsi-images wsi-viewer

Updated Feb 6, 2021
JavaScript

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