markov-state-model

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

🚂 Python API for Emma's Markov Model Algorithms 🚂

Tools for estimating and analyzing Markov state models

Modeling molecular ensembles with scalable data structures and parallel computing

[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections

Python package for generating Markov state models

Data, methods and code for research on the molecular dynamics of HIV glycoprotein gp120

Predicting kinetics of aromatic side-chain flipping using Markov State Model

Scripts used for MSM and post-dynamics analysis of PMV simulations

Cryptic pocket prediction using AlphaFold 2