The Wayback Machine - https://web.archive.org/web/20220802120045/http://github.com/pinellolab/
Skip to content
@pinellolab

Pinello Lab

Massachusetts General Hospital/ Harvard Medical School

Pinned

  1. STREAM Public

    STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

    Jupyter Notebook 140 39

  2. CRISPResso2 Public

    Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

    Python 147 72

  3. Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

    HTML 41 10

  4. CRISPR-SURF Public

    Python 13 2

  5. PrimeDesign Public

    Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!

    Python 13 3

  6. MotifRaptor Public

    Explore the effect of genetic variants on transcription factor binding sites

    Python 5 1

Repositories

  • STREAM2 Public

    STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data

    Python 4 BSD-3-Clause 0 0 0 Updated Jul 30, 2022
  • perturb-tools Public

    Analysis Framework for Pooled CRISPR Genome Editing Screens

    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 29, 2022
  • beret Public

    Base Editing with REporter analysis Toolkit

    Python 0 0 3 0 Updated Jul 29, 2022
  • PrimeDesign Public

    Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!

    Python 13 3 5 1 Updated Jul 28, 2022
  • CRISPRitz Public

    Tool package to perform in-silico CRISPR analysis and assessment

    Python 12 6 3 0 Updated Jul 26, 2022
  • dictys Public

    Context specific and dynamic gene regulatory network reconstruction and analysis

    Python 2 AGPL-3.0 0 1 0 Updated Jul 26, 2022
  • CRISPResso2 Public

    Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

    Python 147 72 28 2 Updated Jul 23, 2022
  • CRISPRme Public
    Python 2 1 0 0 Updated Jul 19, 2022
  • Python 0 0 0 0 Updated Jul 10, 2022
  • CRISPRlungo Public

    Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements

    Python 1 0 0 0 Updated Jun 27, 2022

Top languages

Loading…

Most used topics

Loading…