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reproducible

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apptainer / singularity

Star 2.3k
Open

Emit progress information during SIF creation

8
mikegray
mikegray commented Jun 13, 2019

Version of Singularity:

3.0.3

Expected behavior

Some progress or update information during the creation of the SIF file.

Actual behavior

During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.

Steps to reproduce behavior

I was executing a few “larger” builds through the bui

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Enhancement ImageBuilding good first issue

coderefinery / reproducible-research

Star 15
Open

Type along introductions to Snakemake

2
rantahar
rantahar commented Mar 29, 2022

The Snakemake file in the word-count repository is long and seems confusing unless you already know Snakemake.

It might be better for clarity and for timing to write a short Snakefile from scratch instead of displaying an existing one. A short example with only one rule to take in a single file and produce a single file.

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enhancement good first issue

metio / ilo

Star 12

ehsanx / TMLEworkshop

Star 6

Targeted maximum likelihood estimation (TMLE) enables the integration of machine learning approaches in comparative effectiveness studies. It is a doubly robust method, making use of both the outcome model and propensity score model to generate an unbiased estimate as long as at least one of the models is correctly specified.

machine-learning r medicine code reproducible reproducible-research tmle statistical-inference robust epidemiology implementation workshop-materials steps double ipw inverse-probability-weights propensity-score g-computation conference-workshop comparative-effectiveness
  • Updated Aug 24, 2021
  • HTML

ybayle / SATIN

Star 3

Code used in the article "SATIN: A Persistent Musical Database for Music Information Retrieval" by Yann Bayle, Pierre Hanna and Matthias Robine in CBMI 2017. SATIN is a MIR dataset for reproducible research.

audio music data-science machine-learning database reproducible reproducible-research audio-features machine-learning-algorithms reproducible-science dataset music-information-retrieval machinelearning reproducibility features reproduction mir feature reproduce reproducible-experiments
  • Updated Jan 31, 2018
  • Python

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