neuroimaging

In augmentation, elastic_transform, it only applies a random transform on one input image array. I would think to be used for training, the image and mask pair should be transform in the same way. However, this single-input-image, single-output-image method makes it very inconvenient. Could we deform a list of images (np.arrays) using the same transformation in this method ? Thanks!

I think it would be great to add an item about adding a whatsnew/changelog entry to the checklist in the auto-comment workflow.

I am primarily requesting this because I often forget to add a whatsnew entry, and have to be reminded by my PRs' reviewers.

Feature request based on an original suggestion from @sjh26

Is your feature request related to a problem? Please describe.

On windows, a CLI executable started through vtkSlicerCLIModuleLogic::ApplyTask systematically hides any windows. See code here and

The date and time on the output of the running docker container isn't correct, adding a volume "-v /etc/localtime:/etc/localtime:ro" might fix this?

This would help me know how long a process

Some is already in .gitignore, but some is not. We should check all examples.

Following our work on migrating interactive prompts to Click, some shortcomings regarding the current user experience wrt to interactivity surfaced.

Some pipelines provide the caller with the ability to set some parameters in an interactive fashion, which does not play nice with cluster usage where prompts may hang execution indefinitely. One pi

Summary

The Neurocognitive aging data release with behavioral, structural, and multi-echo functional MRI measures dataset has 301 subjects and two runs of three-echo resting state data spread across two sessions. There's also physio data.

Next Steps

1. Add link to Spreng dataset to tedana's multi-echo datasets section.

Summary

User got stuck trying to contribute to NiMARE

Additional details

add the following lines here:
https://github.com/neurostuff/NiMARE/blob/main/docs/dev_guide.rst#installation-for-development

First, you need to clone the NiMARE repository on github.

.. code-block:: bash

  git clone

As said in #258,

• tsvtool should be renamed tsvtools because there are several command and in oral we always pronounce the "s"
• extract should be renamed prepare-data
• split/kfold should be renamed prepare-experiment to make it more clear for new users.