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#
biomedical-image-processing
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107 public repositories
matching this topic...
Tunable U-Net implementation in PyTorch
Updated
May 5, 2020
Python
Tools for computational pathology
Updated
Jul 4, 2022
Python
3D Unet biomedical segmentation model powered by tensorpack with fast io speed
Updated
Oct 8, 2018
Python
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
Updated
Jun 21, 2022
Python
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Updated
Jun 28, 2022
Python
Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images
Updated
Dec 30, 2020
Python
PyTorch Connectomics: segmentation toolbox for EM connectomics
Updated
Jul 4, 2022
Python
ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection
Updated
Jun 21, 2022
Python
Datasets, Transforms and Utilities specific to Biomedical Imaging
Updated
Jul 3, 2018
Python
Read and write Neuroglancer datasets programmatically.
Updated
May 25, 2022
Python
Codes that I have written to complete promise12 prostate segmentation competition.
Updated
Dec 12, 2017
Python
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Updated
Mar 24, 2022
Python
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
Updated
Dec 16, 2018
Jupyter Notebook
A generalizable application framework for segmentation, regression, and classification using PyTorch
Updated
Jun 30, 2022
Python
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Transfer Learning with DCNNs (DenseNet, Inception V3, Inception-ResNet V2, VGG16) for skin lesions classification
Updated
Nov 14, 2019
Jupyter Notebook
Rank3 Code for ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection, Task 3
Updated
Aug 11, 2020
Python
Marching Cubes & Mesh Simplification on multi-label 3D images.
Deep Learning approaches for EM data
Updated
Jun 22, 2022
Python
Smart India Hackathon 2019 project given by the Department of Atomic Energy
Updated
Oct 1, 2020
Python
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
Mesh-based Monte Carlo (MMC)
WMH segmentaion with unet, dilated_unet, and with ideas from denseNet
Updated
Jan 8, 2018
Python
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
Updated
Jun 4, 2020
Jupyter Notebook
Segmenting WSIs using Deep Convolutional Neural Networks
Complete U-net Implementation with keras
Updated
Sep 21, 2021
Python
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
Updated
Jun 17, 2022
Python
An algorithm used for white blood cell nuclei segmentation
Updated
Feb 20, 2019
MATLAB
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