radiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

A Slicer extension to provide a GUI around pyradiomics

(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018

Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.

Hand-crafted radiomics and deep learning-based radiomcis features extraction.

Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other biomarker-based disease diagnosis and prediction, treatment response prediction, disease subtyping, dimensional decoding for transdiagnostic psychiatric diseases or other diseases, disease mechanism exploration and etc.

Import, visualize, and extract image features from CT and RT Dose DICOM files in MATLAB.

Open source of Pyradiomics extension

Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.

Medical Image Radiomics Processor

Image processing tools for radiomics analysis

A tool to perform comprehensive analysis of high-dimensional radiomic datasets

scikit-radiomics’s documentation!

Deep features and radiomics selection with NSGA-II for pulmonary nodule classification

📎 About MIMBCD-UI Project

Factor Modeling for radiomics

Some accessible radiomics datas were provided in this link.

Predict survival time from PET scans

Deep Learning for Automatic Differential Diagnosis of Primary Central Nervous System Lymphoma and Glioblastoma: Multi-parametric MRI based Convolutional Neural Network Model

Haralick feature extraction on medical images exploiting the full dynamics of gray-scale levels

Radiomics Analysis for Prediction of EGFR Mutations and Ki-67 Proliferation Index in Patients with Non-Small Cell Lung Cancer

A GAN method for normalizations of CT images

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

3D Slicer Extension Implementation the CoLlAGe radiomics descriptor

Ontology-guided Radiomics Analysis Workflow (O-RAW)

Code to Implement the Smooth Euler Characteristic Transform (SECT)