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cobra

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BenjaSanchez
BenjaSanchez commented Dec 3, 2019

Problem description

When going through an I/O cycle with a model that has subsystems stored as groups, the members of each group in the sbml file get scrambled on each cycle, as those members are stored in set() structures, which are unordered. This significantly hinders cobrapy to be used for updating a model that has groups and is stored in a Github repository, as hundreds of lines in

help-wanted good first issue
MadhavJivrajani
MadhavJivrajani commented Mar 29, 2021
  • The format in which metrics are exported by grofer export resembles the ndjson format.
    • This is done for ease of appending json objects to a file without having to buffer large json strings in memory.
    • It also makes it easier to read the file in efficient ways such as by maybe lazy loading using generators in python.
  • It'd be helpful to have this men
enhancement good first issue help wanted priority: medium

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  • Updated Apr 30, 2022
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