genome

🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

genes and genomes at your fingertips

🔬 Assemble large genomes using short reads

GenomeTools genome analysis system.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

A genome browser that shows long reads and complex variants better

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Next generation sequencing reads de novo assembler.

Viral genomics analysis pipelines

Genome annotation with AUGUSTUS

Genomic Data Retrieval with R

Nanopore sequence read simulator

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

machine learning for genomic variants

Fast and accurately polish the genome generated by long reads.

A fast 23andMe DNA parser and inferrer for Python

An efficient index for the colored, compacted, de Bruijn graph

🌈Scaffold genome sequence assemblies using linked read sequencing data

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.

Dotplot large Genomes in an Interactive, Efficient and Simple way

Genome Interval Arithmetic in R

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln. Technisch erfolgt diese Übermittlung über den Deutschen Elektronischen Sequenzdaten-Hub (DESH).