aertslab

Pinned

1. cisTopic Public

   cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

   R 110 26

2. SCENIC Public

   SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

   HTML 241 80

3. SCope Public

   Fast visualization tool for large-scale and high dimensional single-cell data

   Python 58 14

4. pySCENIC Public

   pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

   Python 226 127

5. AUCell Public

   AUCell: score single cells with gene regulatory networks

   R 48 18

6. SCENICprotocol Public

   A scalable SCENIC workflow for single-cell gene regulatory network analysis

   Python 82 57