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brain-connectivity

Here are 55 public repositories matching this topic...

nilearn / nilearn

Open

Add "add changelog entry" to auto-comment PR template

1

tsalo commented Apr 11, 2022

I think it would be great to add an item about adding a whatsnew/changelog entry to the checklist in the auto-comment workflow.

I am primarily requesting this because I often forget to add a whatsnew entry, and have to be reminded by my PRs' reviewers.

Read more

Documentation Good first issue

Open

`permuted_ols` and `non_parametric_inference` are not well documented

8

Open

Glover HRF is not really Glover HRF?

2

Find more good first issues

urish / muse-js

Muse 2016 EEG Headset JavaScript Library (using Web Bluetooth)

eeg typescript-library web-bluetooth eeg-data bci brain-computer-interface eeg-headband eeg-headset brain-connectivity

Updated Apr 28, 2022
TypeScript

cwatson / brainGraph

Graph theory analysis of brain MRI data

r statistics graph measure neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography graph-measures

Updated Mar 26, 2021
R

dPys / PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

workflow metrics optimization data-frame networkx ensemble-learning networks dmn fmri decision-trees nilearn fuzzy-logic covariance multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling

Updated Apr 5, 2022
Python

basiralab / GNNs-in-Network-Neuroscience

A review of papers proposing novel GNN methods with application to brain connectivity published in 2017-2020.

biomarker gans brain-connectivity geometric-deep-learning gnns network-neuroscience gnn graph-neural-network graph-fusion graph-synthesis graph-prediction brain-disorders graph-superresolution predictive-intelligence graph-integration graph-timeseries brain-gnn

Updated Jan 14, 2022

Eden-Kramer-Lab / spectral_connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

python neuroscience spectrogram electrophysiology coherence frequency-domain brain-connectivity multitaper connectivity-measures canonical-coherence phase-lag-index spectral-granger-causality global-coherence

Updated Mar 28, 2022
Python

basiralab / BrainNet-ML-ToolBox

Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.

machine-learning machine-learning-algorithms feature-selection feature-extraction classification dimensionality-reduction data-processing brain-connectivity brain-networks brain-disorders

Updated Jun 2, 2020
Python

SIMEXP / niak

Open

verbose broken in `niak_brick_regress_confounds`

pbellec commented Nov 2, 2018

This line https://github.com/SIMEXP/niak/blob/master/bricks/fmri_preprocess/niak_brick_regress_confounds.m#L234

should say "Adding motion parameters..."

and not "Adding high frequency noise..."

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good first issue

ActflowToolbox

ColeLab / ActflowToolbox

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

machine-learning neural-networks neuroimaging simulations fmri brain-connectivity brainweb activity-flow

Updated Dec 9, 2021
Python

basiralab / MultiGraphGAN

MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.

generative-adversarial-network gan graph-generation brain-connectivity predictive-learning geometric-deep-learning multimodal-deep-learning multi-view-learning brain-graphs predictive-intelligence source-graph target-graph morphological-brain-networks

Updated Apr 13, 2021
Python

basiralab / RegGNN

Regression Graph Neural Network (regGNN) for cognitive score prediction.

regression brain-connectivity symmetric-positive-definite network-neuroscience riemannian-manifold graph-neural-networks gnn sample-selection cognitive-score matrix-parallel-transport geodesic-transport

Updated Aug 16, 2021
Python

BRAPH

softmatterlab / BRAPH

Brain Analysis using Graph Theory

neuroscience brain-connectivity neuroscience-methods brain-connectome

Updated Jul 5, 2019
MATLAB

brain-network / bnt

Brain Network Toolbox

graph-algorithms network-analysis brain-connectivity multilayer-network

Updated Nov 11, 2021
MATLAB

basiralab / DGN

How to fuse a population of graphs into a single one using graph neural networks?

machine-learning-algorithms network-analysis cbt brain-connectivity geometric-deep-learning brain-networks graph-neural-networks gnn network-integration network-fusion graph-fusion graph-integration brain-gnn atlas-learning

Updated Jan 4, 2022
Python

basiralab / HCAE

HCAE (HyperConnectome AutoEncoder) for brain state identification.

brain-connectivity graph-embedding morphological-brain-networks hyperconnectome hyperconnectivity hyperconnectome-autoencoder hypergraph-embedding multiview-graph distribution-alignment hypergraph-convolutional-layers hypergraph-autoencoding

Updated Oct 19, 2020
Python

EsiSeraj / ERP_Connectivity_EMG_Analysis

Essential Motor Cortex Signal Processing MATLAB Toolbox which implements various methods for three major aspects of investigating human motor cortex from Neuroscience view point: (1) ERP estimation and quantification, (2) Cortical Functional Connectivity analysis and (3) EMG quantification

erp eeg erd ers matlab-functions emg brain-computer-interface event-related-potentials brain-connectivity user-manual functional-connectivity electroencephalogram time-frequency-analysis event-related-synchronization event-related-desynchronization erp-time-dynamics cortical-functional-connectivity electromyogram emg-quantification free-toolbox

Updated Jul 22, 2019
MATLAB

patrk / pyPTE

Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy

neuroscience eeg brain brain-connectivity eeg-analysis transfer-entropy phase-transfer-entropy

Updated May 31, 2018
Python

basiralab / GSR-Net

Graph SuperResolution Network using geometric deep learning.

data-generation brain-connectivity generative-models u-net deep-learning-architectures predictive-learning geometric-deep-learning network-neuroscience brain-graphs graph-superresolution gsr-net resolution-connectomes predictive-intelligence

Updated Jan 25, 2021
Python

kloewe / conan

CONnectivity ANalysis tools in Matlab

matlab gcc doi neuroimaging fmri mex-files connectome brain-connectivity kruse

Updated Oct 11, 2017
MATLAB

NIRALUser / CIVILITY

Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.

seed fsl brain-connectivity tractography connectivity-matrix brain-connectome civility

Updated Jun 8, 2021
JavaScript

basiralab / netNorm-PY

netNorm (network normalization) framework for multi-view network integration (or fusion), recoded up in Python by Ahmed Nebli.

biomarker-discovery brain-connectivity network-neuroscience brain-networks sample-selection high-order-connectivity connectome-mapping network-integration network-fusion network-normalization multi-view-networks multigraph-integration multigraph-fusion brain-disorders

Updated Jul 3, 2020
Python

basiralab / ABMT

ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).

generative-adversarial-network gan data-generation multiplex graph-generation gender-classification connectome brain-connectivity brain-network graph-embedding predictive-learning geometric-deep-learning brain-networks predictive-intelligence morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes

Updated Sep 20, 2020
Python

smlacava / Athena

ATHENA (Automatic Toolbox for Handling Experimental Neural Analysis)

neuroscience eeg eeg-signals neuroimaging eeg-data brain brain-imaging brain-connectivity eeg-analysis eeg-signals-processing

Updated Apr 10, 2022
MATLAB

basiralab / netNorm

We provide both Matlab and Python versions of netNorm. In this folder you find the Maltab version of the code.

machine-learning biomarker-discovery brain-connectivity network-neuroscience sample-selection connectome-mapping network-integration network-fusion network-normalization multi-view-networks multigraph-integration multigraph-fusion brain-disorders high-order-networks

Updated Mar 29, 2020
MATLAB

basiralab / BGSR-PY

Brain Graph Super-Resolution: how to generate high-resolution graphs from low-resolution graphs? (Python3 version)

machine-learning-algorithms cbt brain-connectivity superresolution predictive-learning network-neuroscience graph-superresolution connectional-brain-template generative-learning

Updated Sep 15, 2020
Python

basiralab / RBGM

Recurrent Dynamic Graph Mapper using GNN

deep-learning recurrent-neural-networks brain-connectivity graph-neural-networks predictive-models brain-graphs predictive-intelligence connectomes brain-evolution-prediction

Updated Oct 25, 2021
Python

basiralab / ReMI-Net

Recurrent multigraph integrator network using graph neural network.

recurrent-neural-networks brain-connectivity geometric-deep-learning graph-learning graph-neural-networks graph-fusion graph-prediction connectional-brain-template generative-learning graph-integration

Updated Jan 4, 2022
Python

softmatterlab / Braph-2.0-Python

Brain Analysis using Graph Theory

brain-connectivity neurosicence

Updated Sep 29, 2020
Python

basiralab / CGTS-GAN

Topology-guided cyclic graph generation using GCNs.

gan graph-generation brain-connectivity graph-convolutional-networks gcn cyclegan topology-graph graph-neural-networks brain-connectome

Updated Dec 20, 2020
Python

basiralab / MGN-Net

MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.

data-integration brain-connectivity biological-networks data-fusion multigraph network-neuroscience brain-networks graph-neural-networks graph-normalizer multiview-networks graph-integration connectomes

Updated Apr 12, 2021
Python

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