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adda-team / adda

Star 63
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Multilayered sphere/ellipsoid

myurkin
myurkin commented Apr 23, 2021

The new shape coated2, corresponding to three concentric layers, will be added soon (#291). The natural extension of this shape is arbitrary number of concentric spheres (onion), with command line like:

-shape onion <d2/d> [<d3/d> ...]

where d=d1 is the diameter of the outer sphere, and d1,d2,... is the non-increasing sequence of diameters. The number of layers is limited only by `MA

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usability comp-Logic pri-Low good first issue

draeger-lab / SBSCL

Star 17

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

java api library simulation solver linear-programming simulations ordinary-differential-equations numerical-simulations ode-solver steady-state sbml flux-balance-analysis time-series-analysis constraint-based-modeling fba sbml-model systems-biology-simulation
  • Updated Jan 5, 2022
  • HTML

sthavishtha / turbulence-codes

Star 9

Curated list of some open-source codes for turbulent flow simulations, including turbulent multiphase, turbulent reacting flows, turbulent convection and turbulent atmospheric physics.

open-source university hpc computational-physics cfd numerical-methods navier-stokes convection turbulence fluid-dynamics numerical-simulations computational-fluid-dynamics turbulence-models multiphase-flow compressible-flows low-mach atmospheric-physics reacting-flows turbulent-flows numerical-frameworks afid-gpu
  • Updated Aug 16, 2020

hammouc / MLMC_IS_SRNs

Star 6

This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286

matlab biological-simulations stochastic-process multilevel-models numerical-simulations stochastic-simulation-algorithm numerical-analysis monte-carlo-methods biological-networks multilevel importance-sampling multilevel-monte-carlo stochastic-reaction-networks stochastic-biological-systems
  • Updated Jun 28, 2020
  • MATLAB

ray42 / oomphlib

Star 5

oomph-lib is an object-oriented, open-source finite-element library for the simulation of multi-physics problems. It is developed and maintained by Matthias Heil and Andrew Hazel of the School of Mathematics at The University of Manchester, along with many other contributors.

linear-algebra fluid numerical-calculations finite-elements finite-difference linear-equations numerical-methods fluid-solver linear-algebra-library fluids numerical-optimization numerical-integration fluid-dynamics numerical-simulations fluid-simulation numerical-analysis numerical-computation fluid-structure-interaction finite-element-methods
  • Updated Dec 26, 2018
  • C++

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