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loli / medpy

Medical image processing in Python

Updated Apr 1, 2022
Python

leoliuf / MRiLab

A Numerical Magnetic Resonance Imaging (MRI) Simulation Platform

artificial-intelligence medical-imaging gpu-acceleration data-simulation magnetic-resonance-imaging biomedical-engineering medical-physics

Updated Feb 10, 2021
MATLAB

qMRLab / qMRLab

Star

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

analysis mapping mri data-simulation quantitative magnetic-resonance-imaging magnetization relaxometry qmri quantitative-mri

Updated Feb 11, 2022
MATLAB

nipreps / dmriprep

Star

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

preprocessing bids diffusion-mri magnetic-resonance-imaging bids-apps

Updated Mar 23, 2022
Python

Cardiac-MR-Group-Lund / segment-open

Star

Segment Source Distribution

plugin matlab plugins image-processing medical medical-imaging segmentation image-analysis matlab-interface plugin-system magnetic-resonance-imaging image-analysis-workflows medical-image-processing cardiac computed-tomography matlab-gui cardiac-dynamics cardiac-segmentation image-analysis-and-processing computedtomography

Updated Sep 15, 2021
MATLAB

PacktWorkshops / The-Deep-Learning-with-Keras-Workshop

Star

An Interactive Approach to Understanding Deep Learning with Keras

machine-learning tensorflow scikit-learn keras cross-validation regression classification artificial-neural-networks logistic-regression regularization support-vector-machine vectors decision-trees hyperparameter-tuning model-evaluation magnetic-resonance-imaging k-means-clustering model-tuning scalars linear-transformation

Updated Mar 12, 2022
Jupyter Notebook

LarsonLab / MRI-education-resources

Star

Resources for learning the principles of magnetic resonance imaging (MRI)

mri magnetic-resonance-imaging

Updated Mar 24, 2022
Jupyter Notebook

markus-nilsson / md-dmri

Star

MATLAB code for Multidimensional Diffusion MRI

matlab mri diffusion magnetic-resonance-imaging

Updated Oct 7, 2021
MATLAB

dangom / awesome-mri

Star

Awesome Magnetic Resonance Imaging (MRI)

awesome mri awesome-list magnetic-resonance-imaging

Updated Jun 1, 2021

nipreps / sdcflows

Star

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

magnetic-resonance-imaging echo-planar-imaging nonlinear-distortions image-artifacts

Updated Mar 29, 2022
Python

arthur801031 / 3d-multi-resolution-rcnn

Star

Official PyTorch implementaiton of the paper "3D Instance Segmentation Framework for Cerebral Microbleeds using 3D Multi-Resolution R-CNN."

pytorch medical-imaging faster-rcnn convolutional-neural-networks magnetic-resonance-imaging maskrcnn 3d-object-detection pytorch-implementation 3d-mask-rcnn mmdetection 3d-instance-segmentation cerebral-microbleeds susceptibility-weighted-imaging

Updated Jan 2, 2021
Python

lab-midas / med_segmentation

Star

semantic segmentation for magnetic resonance imaging

deep-neural-networks segmentation adipose-tissue semantic-segmentation magnetic-resonance-imaging organs

Updated Sep 21, 2021
Python

hanyoseob / domain-adaptation-MR

Star

Deep Learning with Domain Adaptation for Accelerated Projection-Reconstruction MR

deep-neural-networks deep-learning convolutional-neural-networks matconvnet magnetic-resonance-imaging domain-adaptation projection-reconstruction

Updated Sep 7, 2018
MATLAB

jsjol / NOW

Star

NOW - Numerical Optimization of gradient Waveforms

diffusion-mri magnetic-resonance-imaging diffusion-trajectory diffusion-trajectories

Updated Mar 29, 2022
MATLAB

pykao / CT2MNI152

Star

This repository applies the affine and deformation transformation on the CT scan in the subject space, and register it to the MNI 1mm space

affine-transformation magnetic-resonance-imaging computed-tomography medical-image-registration deformation-transformation

Updated Dec 13, 2019
Python

emergelab / hierarchical-brain-networks

Star

Determining the Hierarchical Architecture of the Human Brain Using Subject-Level Clustering of Functional Networks

community-detection brain-imaging magnetic-resonance-imaging network-neuroscience

Updated May 3, 2021
MATLAB

TannerSorensen / sitk_tools

Star

SimpleITK tools for use at the command line

python image-processing python3 mri medical-imaging itk simpleitk magnetic-resonance-imaging medical-image-processing medical-image-analysis

Updated Jan 29, 2019
Python

brudfors / UniRes

Star

Model-based super-resolution of medical images, in PyTorch.

medical-imaging super-resolution magnetic-resonance-imaging computed-tomography

Updated Dec 21, 2021
Python

fabianbalsiger / mrf-reconstruction-midl2019

Star

Code for the MIDL 2019 paper Balsiger et al., On the Spatial and Temporal Influence for the Reconstruction of Magnetic Resonance Fingerprinting

deep-learning image-reconstruction fingerprinting magnetic-resonance-imaging

Updated Mar 12, 2022
Python

mrphys / tensorflow-mri

Star

A Library for Modern Computational MRI on Heterogenous Systems

python machine-learning tensorflow ml mri magnetic-resonance-imaging

Updated Apr 2, 2022
Python

koflera / XTYT-CNN

Star

Implementation of a 2D spatio-temporal CNN for artefacts-reduction in accelerated 2D cardiac cine MRI.

deep-learning neural-networks inverse-problems magnetic-resonance-imaging

Updated Nov 6, 2020
Python

AIMedLab / BAGAU-Net

Star

Code and Datasets for the paper "Brain atlas guided attention u-net for white matter hyperintensity segmentation", published on AMIA 2021 Informatics Summit.

deep-learning mri medical-imaging magnetic-resonance-imaging u-net wmh-segmentation white-matter-hyperintensities cerebral-small-vessel-disease

Updated Oct 21, 2020
Python

a-doering / body_part_identification

Star

Find body parts in 3D MRI images.

deep-neural-networks magnetic-resonance-imaging

Updated Oct 25, 2020
Python

mathieuboudreau / qmt-optimization

Star

Quantitative Magnetization Transfer MRI Optimization Toolbox

optimization matlab mri medical-imaging optimization-tools magnetic-resonance-imaging

Updated Dec 14, 2017
MATLAB

catetrai / CEST_EVAL_local

Star

CEST-MRI analysis toolbox adapted for Bruker scanners from cest-sources/CEST_EVAL

matlab neuroscience magnetic-resonance-imaging neuroscience-methods cest-mri

Updated Apr 21, 2017
MATLAB

ottaviadipasquale / react-fmri

Star

REACT: Receptor-Enriched Analysis of functional Connectivity by Targets

react science functional neuroscience mri pet neuroimaging magnetic-resonance-imaging positron-emission-tomography receptors neurotransmission functional-mri neurotransmitters pharmacological-mri multimodal-imaging

Updated Jul 26, 2021
Python

agahkarakuzu / rrsg2020-dashboard

Star

Dashboard for ISMRM RRSG 2020 Challenge, powered by Plotly-Dash, deployed to Heroku via GH-Actions.

mri reproducibility magnetic-resonance-imaging

Updated Aug 13, 2020
Python

ccoolbaugh / SciRep-Coolbaugh-2019

Star

Code and data to recreate figures and analyses for our Scientific Reports paper "Cold exposure induces dynamic, heterogeneous alterations in human brown adipose tissue lipid content".

r r-markdown magnetic-resonance-imaging reproducible-analysis thermoregulation cold-exposure brown-adipose-tissue

Updated Jul 16, 2019

SAIL-GuoLab / DeepContrast_Demo

Star

This is the repository that accompanies the submission "Deep Learning Substitutes Gadolinium in Detecting Functional and Structural Brain Lesions with MRI", under review at Nature Biomedical Engineering.

deep-learning image-processing computational-neuroscience mri brain-imaging magnetic-resonance-imaging translational-research mri-brain

Updated Sep 6, 2021
Python

StevenWhitaker / STFR.jl

Star

STFR: Small-Tip Fast Recovery MRI

magnetic-resonance-imaging small-tip-fast-recovery

Updated Mar 14, 2022
Julia

magnetic-resonance-imaging

Here are 37 public repositories matching this topic...

loli / medpy

leoliuf / MRiLab

qMRLab / qMRLab

nipreps / dmriprep

Cardiac-MR-Group-Lund / segment-open

PacktWorkshops / The-Deep-Learning-with-Keras-Workshop

LarsonLab / MRI-education-resources

markus-nilsson / md-dmri

dangom / awesome-mri

nipreps / sdcflows

arthur801031 / 3d-multi-resolution-rcnn

lab-midas / med_segmentation

hanyoseob / domain-adaptation-MR

jsjol / NOW

pykao / CT2MNI152

emergelab / hierarchical-brain-networks

TannerSorensen / sitk_tools

brudfors / UniRes

fabianbalsiger / mrf-reconstruction-midl2019

mrphys / tensorflow-mri

koflera / XTYT-CNN

AIMedLab / BAGAU-Net

a-doering / body_part_identification

mathieuboudreau / qmt-optimization

catetrai / CEST_EVAL_local

ottaviadipasquale / react-fmri

agahkarakuzu / rrsg2020-dashboard

ccoolbaugh / SciRep-Coolbaugh-2019

SAIL-GuoLab / DeepContrast_Demo

StevenWhitaker / STFR.jl

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