reactions

Bug Description

There is a wrong input at Example Input Files at RMG User's Guide (https://react

It would be useful to keep track of how many retries a simulation did in the amr_diag.out file, which already records the coarse timestep info

It would be a bit of fun to see if stk can handle building things like this: https://chemrxiv.org/articles/preprint/Isogonal_Weavings_on_the_Sphere_Knots_Links_Polycatenanes/12616268

Move non __init__ functions from bot.py to utils.
This also means updating the function references inside all cogs.

In beam experiments often the delay between species creation and diffusion to the detector is modeled as a constant TP domain with a first order loss outlet. The first order loss outlet molar flow rate is some constant loss rate k times the moles in the constant TP reactor. Some of our users have requested this feature.

Is your feature request related to a problem? Please describe.
When running many species / reaction in ARC, it is often helpful to trace the history of a single species or TS. The current log file is too large to do that conveniently.

Describe the solution you'd like
Create a log file in the output folder of each species / TS with the relevant data.

actually : form('myForm')

may be later : form(action)