Discussions

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  Mouse genome support?

  alba179 asked Sep 17, 2025 in Q&A · Unanswered

  

  

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  Questions about Oncoplot and TMB

  DoraCChen asked Jul 7, 2025 in Q&A · Unanswered

  

  

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  read.maf: duplicate variants removed?

  complexgenome asked May 18, 2024 in Q&A · Answered

  

  

  

  

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  how to add new column in each maf dataframe?

  complexgenome asked May 24, 2024 in Q&A · Answered

  

  

  

  

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  Extract TSB order from oncoplot

  GeroKn asked Feb 11, 2025 in Q&A · Answered

  

  

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  Adding custom data to the right of the plot

  juferban started Sep 20, 2024 in Ideas

  

  

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  Applying inferHeterogeneity to ClonEvol

  xiw588 started Oct 30, 2024 in General

  

  

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  OncogenicPathway

  avrajit asked Oct 24, 2024 in Q&A · Unanswered

  

  

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  About the calculation of the TMB?

  baike687 asked Feb 5, 2021 in Q&A · Unanswered

  

  

  

  

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  How to define colors for clinical features that use continuous values

  juferban started Sep 20, 2024 in General

  

  

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  genes from pathways()

  SplitInf asked Jun 20, 2024 in Q&A · Unanswered

  

  

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  font and graph too small from pathways, pfamDomains, plotOncodrive and drugs

  complexgenome asked May 24, 2024 in Q&A · Unanswered

  

  

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  oncodrive: Error in if (pchange[pchange %in% colnames(dat)] > 0)

  complexgenome asked May 21, 2024 in Q&A · Unanswered

  

  

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  merged MAFs - changed sample name | error in oncodrive

  complexgenome asked May 16, 2024 in Q&A · Answered

  

  

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  Export plot for publication.

  rk2802 asked Jan 29, 2022 in Q&A · Unanswered

  

  

  

  

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  TCGA - Including copy number data into oncoplots

  LeaLe88 asked Nov 3, 2023 in Q&A · Unanswered

  

  

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  How do I remove the pathway row from my oncoplot?

  Sjs3942 asked Nov 2, 2023 in Q&A · Unanswered

  

  

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  How to merge multiple MAF files into one MAF file ?

  GAUSS66-well asked Apr 13, 2022 in Q&A · Answered

  

  

  

  

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  How to determine the value of captureSize?

  h170607 started Oct 8, 2023 in General

  

  

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  Remove TMB

  SameerShankar asked Jul 28, 2023 in Q&A · Unanswered

  

  

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  another tool than vcf2maf?

  complexgenome started Jul 17, 2023 in General

  

  

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  survGroup, pval adjustment for multiple testing

  sickman2000 asked Jun 22, 2023 in Q&A · Unanswered

  

  

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  extractSignatures error

  pradeep-sidd started Jun 12, 2023 in General

  

  

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  Using Copy Number data for significance while doing cohort analysis

  satyakam001 started May 16, 2023 in General

  

  

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  Do we need to filter the CNV data as well for each cohort while using the cohort analysis to compare cohorts?

  satyakam001 started May 1, 2023 in General

  

  

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