-
Updated
Mar 1, 2022
#
Bioinformatics
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Here are 6,260 public repositories matching this topic...
List of Computer Science courses with video lectures.
programming-language
computer-science
security
machine-learning
bioinformatics
web-development
computer-vision
algorithms
robotics
computer-graphics
databases
stanford-university
embedded-systems
systems
quantum-computing
computer-architecture
computer-scientists
database-systems
harvard-university
iit-delhi
state-university
peterjc
commented
Jan 1, 2022
See https://github.com/biopython/biopython/blob/master/Bio/SeqFeature.py and __add__, need to do the same specifically for integer offsets.
Workaround feature + (-5) instead of feature - 5, see https://twitter.com/tomeraltman/status/1473764959347638273
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
-
Updated
Jan 28, 2022 - Python
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
python
bioinformatics
analysis
clustering
gene-expression
data-visualization
dimensionality-reduction
awesome-list
data-integration
atac-seq
single-cell
rna-seq-data
scrna-seq-data
cell-cycle
cell-differentiation
gene-expression-profiles
analysis-pipeline
cell-populations
rna-seq-experiments
cell-clusters
-
Updated
Feb 11, 2022
A curated list of awesome Bioinformatics libraries and software.
-
Updated
Jan 11, 2022
A DSL for data-driven computational pipelines
docker
groovy
hello
aws
cloud
bioinformatics
pipeline
nextflow
hpc
reproducible-research
workflow-engine
slurm
pipeline-framework
sge
singularity
reproducible-science
dataflow
singularity-containers
-
Updated
Mar 2, 2022 - Groovy
Conda recipes for the bioconda channel.
-
Updated
Mar 3, 2022 - Shell
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
adapter
quality
bioinformatics
quality-control
filter
ngs
sequencing
overlap
splitting
duplication
umi
trimming
preprocessing
filtering
illumina
fastq
merging
qc
polyg
-
Updated
Feb 3, 2022 - C++
A versatile pairwise aligner for genomic and spliced nucleotide sequences
-
Updated
Mar 1, 2022 - C
gtca
commented
Feb 10, 2022
- I have checked that this issue has not already been reported.
- I have confirmed this bug exists on the latest version of scanpy.
- (optional) I have confirmed this bug exists on the master branch of scanpy.
Related issues: #1975.
Minimal code sample
The reproducible example below features a few observations but the real-world scenario for this issue is very lik
A full spaCy pipeline and models for scientific/biomedical documents.
-
Updated
Mar 3, 2022 - Python
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
-
Updated
Mar 1, 2022 - C
Toolkit for processing sequences in FASTA/Q formats
-
Updated
Nov 8, 2021 - C
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
-
Updated
Mar 3, 2022 - Python
samuell
commented
May 8, 2021
Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org
data-mining
bioinformatics
computer-vision
cheminformatics
social-network
pytorch
3d-point-clouds
science-research
geometric-deep-learning
graph-neural-networks
deep-gcns
-
Updated
Feb 16, 2022 - Python
A plotly.js React component from Plotly 📈
-
Updated
Feb 9, 2022 - JavaScript
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
-
Updated
Mar 1, 2022 - Go
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
docker
application
workflow
cloud
bioinformatics
scala
executor
hpc
containers
wdl
common-workflow-language
ga4gh
cwl
workflow-description-language
workflow-execution
-
Updated
Mar 3, 2022 - Scala
Unix, R and python tools for genomics and data science
-
Updated
Dec 7, 2021 - Shell
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
-
Updated
Dec 9, 2021 - Go
Python and C++ code for reading and writing genomics data.
-
Updated
Dec 9, 2021 - C++
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
-
Updated
Mar 31, 2021 - Python
MMseqs2: ultra fast and sensitive search and clustering suite
bioinformatics
taxonomy
metagenomics
alignment
sequence-clustering
profile-search
sequence-search
linclust
mmseqs
blast
-
Updated
Mar 2, 2022 - C
Scripts to download genomes from the NCBI FTP servers
python
bioinformatics
genomics
command-line
biology
genbank
ncbi-taxonomy
ncbi
refseq-genomes-belonging
bacterial-refseq-genomes
download-genomes
fungal-genomes
genbank-format
mick-scripts
older-versions
-
Updated
Dec 1, 2021 - Python


Describe your context
Please provide us your environment, so we can easily reproduce the issue.
pip list | grep dashbelowif frontend related, tell us your Browser, Version and OS