Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
Very simple issue. When you start up HNN two windows appear ('param' and 'model schematics'), plus a little dialogue box that says 'Welcome to HNN! Default parameter file loaded. Press 'Run simulation' to display simulation output.' with a little 'run' button on it.
First time I started HNN that dialogue box opened offscreen, so I didn't know it was there. Because I didn't click 'run', n
Installing brainreg brings in 3.4GB of dependencies, as measured by my virtualenv folder's size. I see many things I don't think(?!) I need for a simple registration - e.g. ipython, jinja2, pyside2, sphinx, and napari. [I could be wrong here, of course.]
Might I suggest verifying what is needed, and perhaps having separate extras for some of this functionality? This could leave the core "pip
Hi,
Very simple issue. When you start up HNN two windows appear ('param' and 'model schematics'), plus a little dialogue box that says 'Welcome to HNN! Default parameter file loaded. Press 'Run simulation' to display simulation output.' with a little 'run' button on it.
First time I started HNN that dialogue box opened offscreen, so I didn't know it was there. Because I didn't click 'run', n