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calcium

Here are 14 public repositories matching this topic...

flika-org / flika

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An interactive image processing program for biologists written in Python.

python imagej image-processing neurons fluorescence microscopy calcium biologists astrocytes

Updated May 31, 2021
Python

cptx032 / calcium

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A ascii/text game library

game python game-engine pixel text ascii character ascii-art ascii-game python-3 game-library monochrome calcium 1bit

Updated Jan 7, 2021
Python

vladscript / FinderSpiker

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Signal Processing Toolbox for Calcium Imaging Data

Updated Jul 15, 2021
MATLAB

simo-91 / calcium-clustering

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Calcium live imaging pipeline

r network calcium

Updated Aug 22, 2021
R

jarosado0911 / Neuro-Collection-Tutorial

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These are tutorials I am making for using Neuro-Collection with ug4

lua cplusplus cpp parallel-computing computational-neuroscience scientific-computing neurons ughub ug4 calcium calcium-concentration ugcore neuro-collection cable-equation calcium-dynamics

Updated Feb 24, 2021
Lua

atamalu / GCalcium

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A Data Manipulation and Analysis Package for Calcium Indicator and Waveform Data

waveform fluorescence calcium gcamp

Updated Jul 12, 2019
R

drchristianlee / GC6-wf

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Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

behavior calcium-imaging imaging calcium

Updated Jan 25, 2020
MATLAB

CellSMB / cardiac_ecc

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Code to simulate excitation-contraction coupling in cardiac cells using FE methods

computational-physiology calcium finite-element-methods cardiac-cells calcium-release

Updated Jan 24, 2018
Fortran

martharcb / Fluo4_R

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Calcium imaging pipeline for R

segmentation peaks calcium

Updated Jan 24, 2020
R

emmamcivor / matlab_FASEB_Calcium

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Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018

mathematical-modelling mathematical-biology greens-functions calcium

Updated Jan 11, 2019
MATLAB

drchristianlee / prominence-plots

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Scripts to create prominence plots from widefield calcium imaging data. Steinmetz et al., 2017 eneuro

calcium-imaging calcium calcium-signals

Updated Jan 25, 2020
MATLAB

trystansanders / Sanders_et_al_2021_biogeosciences

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repository for R code from https://doi.org/10.5194/bg-18-2573-2021

marine calcium calcification baltic geomar

Updated May 5, 2021
R

quinngroup / toxoplasma-isbi2018

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Code for IEEE ISBI 2018 publication.

clustering calcium tracking-algorithm toxoplasma-gondii

Updated Mar 9, 2018
Jupyter Notebook

stephanmg / wave3d

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Calcium wave simulation scripts

numerical-methods calcium

Updated Oct 8, 2020
Lua

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