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Flatiron Institute

Popular repositories

  1. CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Jupyter Notebook 439 293

  2. Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 206 136

  3. finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 130 45

  4. Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 92 65

  5. DeepFRI Public

    Deep functional residue identification

    Python 90 26

  6. FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 55 18

Repositories

  • spack Public

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    Python 1 1,521 0 2 Updated Jan 18, 2022
  • solid_dmft Public

    solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library.

    Python 6 2 0 0 Updated Jan 18, 2022
  • nixpack Public

    nix+spack = nixpack (spanix?)

    Nix 14 MIT 2 0 1 Updated Jan 18, 2022
  • sciware Public

    Learning materials for scientific software development

    HTML 32 19 1 0 Updated Jan 18, 2022
  • Python 6 1 0 0 Updated Jan 17, 2022
  • fmm2d Public

    This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.

    Fortran 14 Apache-2.0 5 0 0 Updated Jan 14, 2022
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

  • public_www Public

    Basic templates for individual user pages in the public/_www directory

    SCSS 2 Apache-2.0 0 0 0 Updated Jan 13, 2022
  • binderhub Public

    Deterministically build docker images from a git repository + commit

    Python 1 BSD-3-Clause 315 0 0 Updated Jan 11, 2022
  • FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.

    Fortran 55 18 4 1 Updated Jan 10, 2022

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