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JuliaGraphs / LightGraphs.jl

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Performance of diameter

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bkamins
bkamins commented Jan 23, 2021

I have a gh graph on 37700 vertices and 289003 edges.

Calculation of its diameter like this:

maximum(maximum(gdistances(gh, i)) for i in vertices(gh))

takes around 250 seconds (probably this is not an optimal algorithm for the task but at least it works).

However, when I run diameter(gh) the process takes so long that I did not wait till it finished.

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efficiency / performance good first issue

v6d-io / v6d

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opensemanticsearch / open-semantic-visual-graph-explorer

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Open Semantic Visual Linked Data Graph Explorer: Open Source tool (web app) and user interace (UI) for discovery, exploration and visualization of direct and indirect connections between named entities like persons, organizations, locations & concepts from thesarus or ontologies within your documents and knowledgegraph

visualization python semantic ui graph discovery semantic-ui explorer exploration knowledge-discovery user-interface graph-visualization network-visualization network-analysis graph-analytics graph-visualisation graph-analysis linkeddata network-virtualization named-entity-graph
  • Updated Jan 16, 2020
  • HTML

domargan / awesome-dynamic-graphs

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A collection of resources on dynamic/streaming/temporal/evolving graph processing systems, databases, data structures, datasets, and related academic and industrial work

awesome graph graphs graph-processing awesome-list datasets graph-databases graph-analytics awesome-lists streaming-graph-processing graph-datastructures evolving-graphs dynamic-graphs streaming-graph-data temporal-graphs dynamic-graph-processing streaming-graphs temporal-graph-processing
  • Updated Feb 2, 2021

parashardhapola / scarf

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Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

bioinformatics big-data genomics clustering scrna-seq graph-analytics memory-efficient tsne differential-expression umap dimension-reduction single-cell-genomics single-cell-rna-seq scalable-data-analysis single-cell-atac-seq multiomics cite-seq pseudotime scatac-seq gene-modules
  • Updated Sep 7, 2021
  • Python

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