Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories

toil Public

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Python 765 217
dsub Public

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

Python 197 37
terra-ui Public

Web user interface for the Terra platform

JavaScript 38 12
leonardo Public

Notebook service

Scala 25 15
job-manager Public

Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

TypeScript 21 4
azul Public

Metadata indexer and query service used for HCA and CGP

Python 15 5

azul Public
Metadata indexer and query service used for HCA and CGP

Python 15 Apache-2.0 5 344 31 Updated Oct 30, 2021
leonardo Public
Notebook service

Scala 25 15 1 13 Updated Oct 30, 2021
toil Public
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Python 765 Apache-2.0 217 357 (1 issue needs help) 21 Updated Oct 29, 2021
consent-ontology Public
Broad Institute Data Use Oversight System

Java 6 BSD-3-Clause 0 0 2 Updated Oct 29, 2021
jade-data-repo Public
The repo for the terra data repository built by the jade team.

Java 9 BSD-3-Clause 5 0 17 Updated Oct 29, 2021
hca-ingest Public

Python 5 BSD-3-Clause 1 0 1 Updated Oct 29, 2021
jade-data-repo-ui Public
UI for the Jade Data Repo

JavaScript 2 BSD-3-Clause 1 0 10 Updated Oct 29, 2021
terra-external-credentials-manager Public

Java 2 0 0 1 Updated Oct 29, 2021
terra-ui Public
Web user interface for the Terra platform

JavaScript 38 BSD-3-Clause 12 145 8 Updated Oct 29, 2021
terra-workspace-manager Public

Java 5 BSD-3-Clause 4 0 3 Updated Oct 29, 2021

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