The Wayback Machine - https://web.archive.org/web/20220104004028/https://github.com/topics/immunology
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107 public repositories
matching this topic...
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
Updated
Sep 18, 2021
Java
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Git-based TCR database storage & management. Submissions welcome!
Updated
Oct 11, 2021
Groovy
Post-analysis of immune repertoire sequencing data
Updated
Sep 16, 2019
Groovy
Tools and databases for analyzing HLA and VDJ genes.
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Updated
Dec 10, 2021
Jupyter Notebook
An interactive web portal for exploring immuno-oncology data
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Updated
Mar 2, 2018
Groovy
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
A RepSeq processing swiss-knife
Updated
Mar 11, 2019
Groovy
[DEPRECATED, see
https://immunarch.com/ ] tcR: an R package for immune receptor repertoire advanced data analysis.
Python package and command line tool for epitope prediction
Updated
Mar 17, 2021
Jupyter Notebook
An R Interface to the ImmuneSpace database portal
simpler single cell RNAseq data clustering
Precision HLA typing from next-generation sequencing data
Updated
Dec 14, 2021
Nextflow
A lightweight immune repertoire browser
Updated
Dec 10, 2019
JavaScript
Huge-scale, high-performance flow cytometry clustering in Julia
Updated
Jul 22, 2021
Julia
A data-centric flow/mass cytometry automated analysis framework
Updated
Dec 27, 2021
Python
R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Updated
Dec 12, 2021
Python
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
Updated
Dec 22, 2021
Python
Comparison of Adaptive Immune Receptor Repertoires
An R package to analyze single-cell V(D)J data
Code for Celia and Nils' immune aging project.
📝 [Tutorial] RepSeq data mining basics in R
ML based prediction of immunogenic neoantigens for immunotherapy
Updated
Jun 30, 2017
Pep8
The Atlas of Immunoglobulin Repertoires (TheAIR)
Updated
Apr 18, 2020
Jupyter Notebook
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I removed several headings that had been added early on in brainstorming for this manuscript. If anyone is looking for ideas of how to contribute, you could definitely look into how these drug development strategies are being applied to COVID-19!
Additionally, here is the template for adding in