SeqAn's official repository.

Python library to facilitate genome assembly, annotation and comparative genomics

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

Inference of couplings in proteins and RNAs from sequence variation

Genome wide orthology inference and dNdS estimation

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

TREDPARSE: HLI Short Tandem Repeat (STR) caller

BWT, FM-index and bits vector for analyzing DNA sequence data.

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

genomic alignment similarity search tool

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

Reliability Scoring and Masking of Multiple Sequence Alignments

Outlier detection in multiple sequence alignment

A crate to manipulate multiple sequences alignments in Rust.

subset and spaced seed design tool

El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).

♒ Web API for generating nucleotide alignments

A New Hyper-Heuristic Algorithm (FADSA) for Gene Sequence Assembly

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

Base librarys for sequencing data analysis.

Kotlin task for aggregating reads from a BAM file across a set of genomic regions

Differential Search Algorithm for Gene Sequence Assembly

Firefly Algorithm for Gene Sequence Assembly

Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)

Generate frequency tables used by Modeller and IMP.