Pinned repositories
Repositories
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notebooks
Place to host notebooks
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brainlit
This repository is a container of methods that Neurodata uses to expose their open-source code while it is in the process of being merged with larger scientific libraries such as scipy, scikit-image, or scikit-learn. Additionally, methods for computational neuroscience on brains too specific for a general scientific library can be found here, su…
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MCC
Reproducible code for "Multiscale Comparative Connectomics" https://arxiv.org/abs/2011.14990
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primitives-interfaces
A mirror of D3M's primitives-interfaces
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m2g
NeuroData's MRI to Graphs (m2g) - structural connectome estimation package and pipeline
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maggot_models
Modeling Drosophila larval connectomes
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rf-dn-paper
Performance comparisons between random forests and deep networks
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CloudReg
CloudReg
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hyppo
Python package for multivariate hypothesis testing
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maggot_connectome
Paper on modeling the larval Drosophila connectome
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connectocross
Connectocross: statistical characterizations and comparisons of nanoscale connectomes across taxa (A paper in progress)
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task-similarity
a repo for exploring task-similarity and its utility for downstream inference
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ProgLearn
NeuroData's package for exploring and using progressive learning algorithms
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gmot
A paper (in progress) on graph matching via optimal transport.
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talks
NeuroData Talks
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latent-distribution-test
Code for Valid Two-Sample Graph Testing via Optimal Transport Procrustes and Multiscale Graph Correlation: Applications in Connectomics
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nd_ed
Collection of educational resources. Primarily focused on skills that are helpful in the NeuroData lab or the Neuro Data Design course at Johns Hopkins University.
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dos_and_donts
Experiments showing the do's and don'ts of connectome analysis
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combining-representations
A repository to implement, deploy and extend the method described in Learning to rank via combining representations.
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lol
package for dimensionality reduction under supervised data scenarios

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