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mri

Here are 473 public repositories matching this topic...

d-unseductable / ruru

Star

Native Ruby extensions written in Rust

ruby rust mri ruru native-ruby-extensions

Updated Mar 27, 2021
Rust

facebookresearch / fastMRI

Star

A large-scale dataset of both raw MRI measurements and clinical MRI images.

deep-learning pytorch mri medical-imaging convolutional-neural-networks mri-reconstruction fastmri fastmri-challenge fastmri-dataset

Updated Aug 13, 2021
Python

tom-lord / regexp-examples

Star

Generate strings that match a given regular expression

ruby regexp mri data-generation random-string

Updated Mar 23, 2021
Ruby

rordenlab / dcm2niix

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dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

research jpeg dicom neuroscience mri neuroimaging nifti-format mri-images dicom-images nifti jpeg-image dcm nii gz nitrc bids-format dcm2niix mricrogl

Updated Aug 19, 2021
C++

ruby / setup-ruby

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An action to download a prebuilt Ruby and add it to the PATH in 5 seconds

jruby actions mri truffleruby prebuilt-rubies ruby-action prebuilt-ruby

Updated Aug 7, 2021
JavaScript

linhandev / dataset

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医学影像数据集列表

dataset mri medical-imaging ct msd tcia grand-challenge qin-lung-ct 4d-lung qin-prostate-repeatability

Updated Jun 12, 2021

freesurfer / freesurfer

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Neuroimaging analysis and visualization suite

mri neuroimaging freesurfer lcn

Updated Aug 23, 2021
C++

js3611 / Deep-MRI-Reconstruction

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Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo

deep-neural-networks deep-learning compressed-sensing image-reconstruction mri convolutional-neural-networks

Updated Jan 21, 2019
Python

jibikbam / CNN-3D-images-Tensorflow

Star

3D image classification using CNN (Convolutional Neural Network)

neural-network tensorflow cnn medical mri classification convolutional-neural-networks nifti 3d dti

Updated Oct 29, 2019
Python

jcreinhold / intensity-normalization

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normalize the intensities of various MR image modalities

mri fcm neuroimaging normalization ravel intensity-normalization normalization-routines zscore-normalization

Updated Aug 22, 2021
Python

mikgroup / sigpy

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Python package for signal processing, with emphasis on iterative methods

machine-learning compressed-sensing gpu optimization signal-processing mri reconstruction iterative-algorithms nufft rf-pulse-design

Updated Aug 19, 2021
Python

Shopify / yjit

Star

Open

Avoid duplicate generation of side exits

2

XrXr commented Jul 6, 2021

gen_send_general() generates the same side exit twice:

https://github.com/Shopify/yjit/blob/d47f79982375980a4e7ae71d0c5ef6a2be982ba6/yjit_codegen.c#L2963
https://github.com/Shopify/yjit/blob/d47f79982375980a4e7ae71d0c5ef6a2be982ba6/yjit_codegen.c#L2455

We should probably save the side exit code pointer on jitstate_t to avoid this duplication. This caching could be done because we also gen

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enhancement good first issue

poldracklab / mriqc

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Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

machine-learning quality-control mri quality-reporter neuroimaging

Updated Jul 21, 2021
Python

mrirecon / bart

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BART: Toolbox for Computational Magnetic Resonance Imaging

compressed-sensing mri iterative-methods computational-imaging bart-toolbox

Updated Aug 16, 2021
C

josedolz / LiviaNET

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This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

deep-neural-networks theano deep-learning architecture cnn mri medical-imaging neural-networks deep-learning-algorithms neuroimaging convolutional-networks convolutional-neural-networks image-segmentation nifti-format neuroimage medical-image-processing 3d-convolutional-network 3d-cnn scale-study medical-image-analysis medical-image-segmentation brain-segmentation

Updated Nov 20, 2019
Python

spinalcordtoolbox

spinalcordtoolbox / spinalcordtoolbox

Star

Open

Argument `-igt` is not used and should be removed

joshuacwnewton commented May 6, 2021

This was an sct_testing-specific argument, but its usage was commented out in #2315, so the argument is not being used.

https://github.com/neuropoly/spinalcordtoolbox/blob/e52c8d4d461d72e42366751677d06f71cf7bb207/scripts/sct_testing.py#L554-L561

#2315 also has a TODO to remove the argument, but this TODO must have slipped through the cracks. 😅

TODO:

Removed fla

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good first issue refactoring maintenance

Open

Display image message is confusing

6

Open

Output folder should be created with added date-time

2

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imatge-upc / 3D-GAN-superresolution

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3D super-resolution using Generative Adversarial Networks

mri gan brain super-resolution

Updated Sep 3, 2018
Python

cwatson / brainGraph

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Graph theory analysis of brain MRI data

r statistics graph measure neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography graph-measures

Updated Mar 26, 2021
R

Washington-University / workbench

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Connectome Workbench

c-plus-plus neuroscience mri nifti cifti gifti

Updated Aug 17, 2021
C++

ANTsR

ANTsX / ANTsR

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Advanced Normalization Tools in R

r statistical-learning prediction mri registration decomposition segmentation brain

Updated Aug 1, 2021
R

learn-neuroimaging / hitchhackers_guide_brain

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A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

meg eeg mri pet neuroimaging brainweb

Updated Jan 19, 2021

mmuckley / torchkbnufft

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A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

deep-learning pytorch mri reconstruction nufft

Updated Aug 20, 2021
Python

quqixun / BrainPrep

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Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

mri registration preprocessing enhancement brain fsl ants skull-stripping brain-segmentation bias-field-correction

Updated May 15, 2018
Python

qMRLab / qMRLab

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Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization

analysis mapping mri data-simulation quantitative magnetization relaxometry

Updated Aug 12, 2021
MATLAB

Mehrdad-Noori / Brain-Tumor-Segmentation

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Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

deep-learning keras mri attention-mechanism brats u-net brain-tumor-segmentation multi-view tensorflow2

Updated Feb 26, 2020
Python

StefanDenn3r / Unsupervised_Anomaly_Detection_Brain_MRI

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Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study

deep-learning mri gan autoencoder segmentation unsupervised-learning anomaly-detection variational-autoencoder

Updated May 21, 2021
Python

jrieke / cnn-interpretability

Sponsor Star

🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease

machine-learning deep-learning cnn mri medical-imaging convolutional-neural-networks alzheimers-disease interpretability alzheimer-disease-prediction interpretable-machine-learning visualization-methods

Updated Jul 5, 2019
Jupyter Notebook

zaccharieramzi / fastmri-reproducible-benchmark

Star

Open

Correct alternating domain sequence

zaccharieramzi commented Jul 27, 2020

Right now for cross domain networks, you can only have really alternating sequences.
We should correct that by having the i_domain//2 replaced by 2 counters, one for each specific domain.

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enhancement good first issue

Open

Refactor training scripts

Open

Switch to tensorflow addons for tqdm progress bar

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thomaskuestner / CS_MoCo_LAB

Star

Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system

compressed-sensing matlab mri siemens motion-correction gadgetron cs-moco-lab

Updated Feb 12, 2019
MATLAB

reiseburo / hermann

Star

A gem providing cross-platform Kafka producer and consumer support

kafka mri jruby-kafka

Updated Oct 23, 2018
Ruby

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