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cobra

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jeremymchacon
jeremymchacon commented Aug 25, 2020

Hello maintainers of the amazing package,

I recently updated cobrapy and am experienced unexpected behavior with cobra.test.create_test_model("salmonella")

Two things are unusual:

  1. Now, many warnings are given during loading of the model, whereas none were given in a previous version. Here are a few of the warnings:

`Model does not contain SBML fbc package information.
SBML package

MadhavJivrajani
MadhavJivrajani commented Mar 29, 2021
  • The format in which metrics are exported by grofer export resembles the ndjson format.
    • This is done for ease of appending json objects to a file without having to buffer large json strings in memory.
    • It also makes it easier to read the file in efficient ways such as by maybe lazy loading using generators in python.
  • It'd be helpful to have this men

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