The Wayback Machine - https://web.archive.org/web/20210827035511/https://github.com/topics/taxonomy
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332 public repositories
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MMseqs2: ultra fast and sensitive search and clustering suite
Accurate sample inference from amplicon data with single nucleotide resolution
Bugcrowd’s baseline priority ratings for common security vulnerabilities
Updated
Jun 8, 2021
Python
Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable, and Translatable models out of the box.
A taxonomic toolbelt for R
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Updated
Aug 20, 2021
Python
Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.
Updated
Aug 17, 2021
Python
A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems
Updated
Aug 13, 2021
Rust
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
A Practical and Efficient NCBI Taxonomy Toolkit
~ Lightweight, Flexible & Rapid WP Development Framework ~
Application and Python module for average nucleotide identity analyses of microbes.
Updated
Aug 17, 2021
Python
OneNote (desktop) add-in to manage OneNote pages by page tags
Sequana: a set of Snakemake NGS pipelines
Updated
Aug 26, 2021
Jupyter Notebook
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
🐞 Convert NCBI taxonomy dump into lineages
Updated
Feb 14, 2021
Python
Contains a list of Popoto.js examples
Updated
Aug 14, 2021
HTML
Machine Learning based Intrusion Detection Systems are difficult to evaluate due to a shortage of datasets representing accurately network traffic and their associated threats. In this project we attempt at solving this problem by presenting two taxonomies
R interface to the fishbase.org database
Symfony SonataClassificationBundle
Simple, nestable Terms & Taxonomies (similar to WordPress) for Laravel.
Code for paper "End-to-End Reinforcement Learning for Automatic Taxonomy Induction", ACL 2018
Updated
Oct 10, 2018
Python
The source code used for self-supervised taxonomy expansion method TaxoExpan, published in WWW 2020
Updated
Feb 23, 2020
Python
Example plugin for adding an image upload field to taxonomy terms in WordPress
Updated
Sep 25, 2020
JavaScript
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Repository for the Open Information Security Risk Universe
Updated
Feb 10, 2021
Shell
SKOS-Play allows to print SKOS files in HTML or PDF. It also embeds xls2rdf to generate RDF from Excel.
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Overview
Everything in lib/utilities is intended to be Rails agnostic (though many use some feature like
.blank?. These libraries are execellent targets for extraction and simplification of our code base.Extraction target
Re-integration
Refactoring should be s