Tskit developers

Popular repositories

1. msprime Public

   Simulate genealogical trees and genomic sequence data using population genetic models

   Python 121 68

2. tskit Public

   Analyse, create and manipulate tree sequences.

   Python 70 44

3. tsinfer Public

   Infer a tree sequence from genetic variation data.

   Python 27 9

4. pyslim Public

   Tools for dealing with tree sequences coming to and from SLiM.

   Python 15 16

5. tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 8 10

6. tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 7 4