Repositories
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spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
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metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
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immunopepper
Code for the ImmunoPepper project
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tools-project-archives
A commandline tool to create and handle project archives
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projects-2020-Neural-SVGD
Nonparametric variational inference by transporting samples along a dynamically learned trajectory.
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scatter
Master thesis for hanap
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SVGP-VAE
Tensorflow implementation for the SVGP-VAE model.
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ncl
Code of the paper "Neighborhood Contrastive Learning Applied to Online Patient Monitoring"
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genome_graph_annotation
Sparse Binary Relation Representations for Genome Graph Annotation
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bnn_priors
Code for the paper "Bayesian Neural Network Priors Revisited"
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tools-omicstools
Collection of tools and utilities for *omics analyses
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tools-gogo-gadget
A tool to aggregate custom command line tools into one.
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scim
Code for Universal Single-Cell Matching with Unpaired Feature Sets
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projects2020-disentangled-gpvae
Learning disentangled representations from time series.
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GP-VAE
TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155
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row_diff
RowDiff transform for sparsification of graph annotations
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sarek
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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tex-theses-phd-proposal-ajoudaki
Amir's research proposal
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tcell_activation_dockerized
This is the public version of the code for publication. Users can build the docker image from source and run all analyses from the paper.
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dpsom
Code associated with ACM-CHIL 21 paper 'T-DPSOM - An Interpretable Clustering Method for Unsupervised Learning of Patient Health States'

